Locus 417

Sequence ID X_DroMel_CAF1
Location 1,209,484 – 1,209,593
Length 109
Max. P 0.584392
window642

overview

Window 2

Location 1,209,484 – 1,209,593
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 83.06
Mean single sequence MFE -34.97
Consensus MFE -26.82
Energy contribution -25.43
Covariance contribution -1.38
Combinations/Pair 1.42
Mean z-score -1.54
Structure conservation index 0.77
SVM decision value 0.10
SVM RNA-class probability 0.584392
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1209484 109 - 22224390
GUUGGGCUGCAUCAACGUGGCCGGCGUCAAGUGGGUCAUCAAGCUUCAGUUUAUACUGCUCAUGAUACUGCUGAUCUCGGCGCUGGACUUCAUGGUGGGCAGCUUCACU
((..((((((.(((.(((((((((((((.((..((((((..(((...(((....)))))).))))).)..))(....)))))))))...))))).)))))))))..)). ( -40.50)
>DroVir_CAF1 3222 109 - 1
GCUCGGCUGCAUCAAUGUGGCUGGCGUCAAGUGGGUCAUUAAGCUGCAGUUUAUACUGCUGAUGGUAUUGCUUAUAUCGGCGUUAGAUUUCAUGGUUGGCAGCUUUGUG
((..((((((....(((...(((((((((((..(..(((((....(((((....))))))))))...)..))).....))))))))....))).....))))))..)). ( -34.90)
>DroGri_CAF1 3808 109 - 1
GCUCGGCUGCAUUAAUGUGGCUGGUGUCAAGUGGGUGAUCAAAUUACAGUUUAUACUGCUCAUGAUUCUGCUCAUCUCAGCGCUGGAUUUCAUGGUCGGUAGCUUUAUU
....((((((....(((...(..((((..((((((((((((.....((((....))))....)))))..))))).))..))))..)....))).....))))))..... ( -30.40)
>DroWil_CAF1 19880 109 - 1
UCUCGGCUGCAUCAAUGUGGCUGGCGUUAAAUGGGUAAUCAAAUUGCAAUUCAUAUUGCUAAUGAUUUUACUAAUAUCGGCGCUGGACUUUAUGGUGGGCAGCUUUAUA
....((((((....(((.(((..((((..(...(((((....((((((((....))))).)))....)))))....)..))))..).)).))).....))))))..... ( -31.30)
>DroYak_CAF1 1857 109 - 1
ACUAGGCUGCAUUAACGUGGCCGGCGUCAAGUGGGUCAUUAAGCUUCAGUUUAUACUGCUCAUGAUUUUGCUGAUCUCGGCGCUGGACUUCAUGGUGGGCAGCUUCACU
...(((((((.....(((((((((((((..((((((...(((((....)))))....))))))((((.....))))..))))))))...)))))....))))))).... ( -38.80)
>DroMoj_CAF1 1711 109 - 1
GCUCGGCUGCAUCAAUGUGGCAGGCGUCAAGUGGGUGAUCAAACUGCAGUUUAUUCUGCUGAUGAUAUUGCUCAUAUCUGCGCUGGAUUUCAUGGUAGGCAGCUUUGUG
((..((((((....(((...(.(((((...((((((.((((....((((......))))...))))...))))))....))))).)....))).....))))))..)). ( -33.90)
>consensus
GCUCGGCUGCAUCAAUGUGGCUGGCGUCAAGUGGGUCAUCAAACUGCAGUUUAUACUGCUCAUGAUAUUGCUCAUAUCGGCGCUGGACUUCAUGGUGGGCAGCUUUAUU
....((((((.....((((.((((((((..((.(((.((((.....((((....))))....))))...))).))...))))))))....))))....))))))..... (-26.82 = -25.43 +  -1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:06 2006