Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,932,883 – 10,932,987 |
Length | 104 |
Max. P | 0.626536 |
Location | 10,932,883 – 10,932,987 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 94.28 |
Mean single sequence MFE | -29.48 |
Consensus MFE | -25.40 |
Energy contribution | -27.02 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.03 |
Mean z-score | -1.61 |
Structure conservation index | 0.86 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626536 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10932883 104 + 22224390 GACAGCUUCCGUUUCCGGUUCCGCCAUCAAGUCCAAGUAUCCCUUU--CGCUUAUGGAUUUUUUGGCCAACGGAAAGGAUGUGCCGCAGACAUCCAAACUGCACUC ....((.(((.((((((.....((((..((((((((((........--.)))..)))))))..))))...)))))))))...)).((((.........)))).... ( -30.90) >DroSec_CAF1 15708 104 + 1 GACAGCUUCCGUUUCCGGUUCCGCCAUCAAGUCCAAGUAUCCCUUU--CGCUUAUGGAUUUUUUGGCCAACGGAAAGGAUGUGCCGCAGACAUCCAAACUGCACUC ....((.(((.((((((.....((((..((((((((((........--.)))..)))))))..))))...)))))))))...)).((((.........)))).... ( -30.90) >DroEre_CAF1 15235 102 + 1 GACAGCUUCCGUUUCCGGUUCCGCCAUCAAGU-CAAGUAUCCUUUU--CGCUCAUGGAUUU-UCGGCCACCGGAAAGGAUGUGCCGCAGACAUCCAAACUGCACUC ....((.(((.((((((((.(((((((..(((-.(((......)))--.))).))))....-.)))..)))))))))))...)).((((.........)))).... ( -27.70) >DroYak_CAF1 15429 105 + 1 GACAGCUUCCGUUUCCGGUUCCGCCAUCAAGUUCAAGUAUCCUUUUUACGCCUAUGGAUUU-UCGGCCACCGGAAAGGUUGUGCCGCAGACAUCCAAACUGCACUC .((((((....((((((((...(((...(((((((.(((.......))).....)))))))-..))).))))))))))))))...((((.........)))).... ( -28.40) >consensus GACAGCUUCCGUUUCCGGUUCCGCCAUCAAGUCCAAGUAUCCCUUU__CGCUUAUGGAUUU_UCGGCCAACGGAAAGGAUGUGCCGCAGACAUCCAAACUGCACUC ....((.(((.((((((((...((((..((((((((((...........)))..)))))))..)))).)))))))))))...)).((((.........)))).... (-25.40 = -27.02 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:02 2006