| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,926,693 – 10,926,787 |
| Length | 94 |
| Max. P | 0.696963 |
| Location | 10,926,693 – 10,926,787 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 67.64 |
| Mean single sequence MFE | -19.15 |
| Consensus MFE | -10.10 |
| Energy contribution | -10.60 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.696963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10926693 94 - 22224390 CGGGUACGUGUAGGCAGUGCUAUAAUUGCGGUGCAGUUAAUAGCAGUGCUGUUGAAAUAAAAAAAUAUAUUGUU-AACCCA------AAAUUAACAAAUAU .(((((((((((((((.((((((((((((...)))))).)))))).)))).((......))....)))).))).-.)))).------.............. ( -24.00) >DroSim_CAF1 9541 76 - 1 CGGGUACGUGUAGGUAGUGUUAUAAUUGCGGCGCAGUUAAUAGGAGUGCUGUUAAAAAAAAA-------------------------AUAUUAACAAAUAA .......((((..(((((......))))).))))..(((((((.....))))))).......-------------------------.............. ( -12.20) >DroEre_CAF1 9418 96 - 1 CGGCUACGUGUAGGUAGAGCUAUAACUGCGGUGCAGUUACUAGGAGCGCUGUUGAAAAAAUG---AAU--AUUUUAGCAAGAACUUCAACUGUACAAAUGA ..((....(((((......)))))...)).((((((((....((((..(((((((((.....---...--.))))))).))..))))))))))))...... ( -22.40) >DroYak_CAF1 9827 96 - 1 CGCGUACAUGUAGGUAGAACUAUAGAUGCGGUGCAGUUAAUAGUAGUGUUGUUCAGAAAAUA---CAU--AGUUUAAACAAAAAUUGAAACUUACAAAUGA (((((...(((((......))))).)))))(((.((((.......(((((........))))---).(--(((((......)))))).)))))))...... ( -18.00) >consensus CGGGUACGUGUAGGUAGAGCUAUAAUUGCGGUGCAGUUAAUAGGAGUGCUGUUGAAAAAAAA____AU__AGUU_AACCAA______AAAUUAACAAAUAA ............((((.((((((((((((...))))))).))))).))))................................................... (-10.10 = -10.60 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:58 2006