Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,919,614 – 10,919,723 |
Length | 109 |
Max. P | 0.663081 |
Location | 10,919,614 – 10,919,723 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 77.49 |
Mean single sequence MFE | -38.84 |
Consensus MFE | -18.24 |
Energy contribution | -18.86 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.29 |
Mean z-score | -2.07 |
Structure conservation index | 0.47 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10919614 109 + 22224390 CAGCCACUGUCCCAGGGGCUCCAUCCCAUGAUCGUGCUCCUCGGAUCCCGGCUCCUUGGCCAACGUAAGAUUCAGUUGGUAUCUAACGCCAGGAAUAGGCAGUGGACAA ..(((((((((((((((((.(.(((....))).).)))))).)).(((.(((......((((((..........)))))).......))).)))...)))))))).).. ( -43.42) >DroSec_CAF1 2660 109 + 1 CAGCCACUGUCCCAGGGGCUCCACCUCAUGCUCUUGCUGCUCGGAUCCGUGUUCCUUGGCUAACGUAAGAUUAAAUUGGUAUCUUACGCCAGGAACAGGCAGUGGACAA ..(((((((((.(((((((..........))))))).............(((((((.(((....(((((((.........))))))))))))))))))))))))).).. ( -41.00) >DroSim_CAF1 3666 109 + 1 CAGCCAUUGUCCCAGGGGCUCCUCCCCAUGCUGGUGCUCCUCGGAUCCCUGCUCCUUGGCCAACGUAAGAUUCAGUUGGUAUCUAAUGCCAGGAACAGGCAGUGGACAA ..((((((((((.((((((.((..........)).)))))).)))..((((.((((.(((...(....).....(((((...)))))))))))).)))))))))).).. ( -40.10) >DroEre_CAF1 2660 109 + 1 CAGCCACUGUCCCAGGGGCUCCUCCUCAUGCUGCUGCUCCUCGGAUCCCCUCUCCUUGGCCAAAGUAAGAUUCAGUUGGUAUCUAACCCCGGGAACAGGCAGUGCACAA ..((.((((((..(((((.(((.......((....)).....))).))))).((((.((.....((.((((((....)).)))).)))).))))...)))))))).... ( -31.40) >DroYak_CAF1 2708 109 + 1 CAACCACUGUCCAAGCAGCGCCUCCUCCGGCUGGUGCUCCUCGGAUCCCUGGCCCUUGGCCAGUGUAAGAUUCAGUUGGUAUCUAACCCCGGGAACAGGCAGUGGACAA ...((((((((...(((.((((......))).).)))(((.(((....((((((...)))))).((.((((((....)).)))).)).))))))...)))))))).... ( -42.60) >DroAna_CAF1 2678 91 + 1 UAGCCACUGUCCCAGAGGGGCCACU------------UCCUCGGAGUCACC------AUCCAACGUGAGGUUCAGUUGGUAUCUGACACCAGGCACUGGGAGGGAGCAC ..((..((.((((((.((((.....------------.))))((.((((..------..(((((.((.....)))))))....)))).)).....)))))).)).)).. ( -34.50) >consensus CAGCCACUGUCCCAGGGGCUCCACCUCAUGCUGGUGCUCCUCGGAUCCCUGCUCCUUGGCCAACGUAAGAUUCAGUUGGUAUCUAACGCCAGGAACAGGCAGUGGACAA ...((((((((((((.(((................))).)).)).(((..........((((((..........))))))...........)))...)))))))).... (-18.24 = -18.86 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:55 2006