Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,918,699 – 10,918,809 |
Length | 110 |
Max. P | 0.528966 |
Location | 10,918,699 – 10,918,809 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.61 |
Mean single sequence MFE | -43.90 |
Consensus MFE | -26.61 |
Energy contribution | -26.40 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.40 |
Mean z-score | -1.60 |
Structure conservation index | 0.61 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10918699 110 - 22224390 GCGGUAAUGGAGCACCCAUUGCUCUCUACAAUCUGGAGGCACUCCAGGCGAGGAGCGACAUUCGCCGGAGGCGCAGAAG---------AAGGCGCCGCAAUAGCGGUGGAUCACUAGAG ..((((((((.....))))))))(((((...((((...((.((((.((((((........)))))))))))).))))..---------....((((((....))))))......))))) ( -43.90) >DroSec_CAF1 1748 107 - 1 GCGGUAAUGGAGCACCUAUUGCCCUCUACAAUCUGGAGGCACUCCAGGCGAGAAGCGACAUUCGCCGGAGGCGUAGAAG---------AAGGC---GCAACAGCGGUGGGUCACUGGAA ((((((((((.....))))))))(((((.....)))))))..(((((((.....))(((...(((((...((((.....---------...))---)).....))))).))).))))). ( -39.80) >DroSim_CAF1 2754 107 - 1 GCGGUAAUGGAGCACCUAUUGCCCUCUACAACCUGGAGGCACUCCAGGCGAGAAGCGACAUUCGCCGGAGGCGUAGAAG---------AAGGC---GCAAUAGCGGUGGGUCAUUGGAA ((((((((((.....)))))))).(((....(((((((...)))))))..))).))(((...(((((...((((.....---------...))---)).....))))).)))....... ( -38.90) >DroEre_CAF1 1745 110 - 1 GCGGCAAUGGAGCACCCAUCGCCCUCUACAAUCUGGAGGCCCUCCAGGCGCGCAGCGACAUCCGCCGGAAGCGCAGAAG---------AAGGCGACGCAAUAGCGGUGGAUCCCUGGAG (((((.((((.....)))).)))(((((.....))))))).((((((((((...)))..(((((((....((((.....---------...))).)((....))))))))).))))))) ( -43.00) >DroYak_CAF1 1793 110 - 1 GCGGUAAUGGAGCACCCAUUGCCCUCUACAAUUUGGAGGCACUCCAGGCGAGGAAUGACAACCGCCGAAAGCGCAGAAG---------AAGGCGCCGCAAUAGCGGCGGAUCAUUGGAG ((((((((((.....))))))))(((((.....))))))).((((((..(((......)..(((((....((((.....---------...)))).((....))))))).)).)))))) ( -42.80) >DroAna_CAF1 1772 113 - 1 GGGGCAAUGGAGCCGCCAUCGUCCUCUACAACCUGGAGGCACUCCAGGCCCGGAGCA------GCCGGAGGCGGAGACGUCGCCGGCGAAGGCAUGCAGAGAGCGGGGGAUCCGUGGAG .((((.((((.....)))).))))(((((..(((((((...)))))))(((...((.------(((((.((((....)))).)))))....))..((.....)))))......))))). ( -55.00) >consensus GCGGUAAUGGAGCACCCAUUGCCCUCUACAAUCUGGAGGCACUCCAGGCGAGGAGCGACAUUCGCCGGAGGCGCAGAAG_________AAGGCG_CGCAAUAGCGGUGGAUCACUGGAG ..((((((((.....))))))))(((((...(((((((...)))))))...........((((((((.....((......................)).....))))))))...))))) (-26.61 = -26.40 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:53 2006