Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,908,233 – 10,908,333 |
Length | 100 |
Max. P | 0.500000 |
Location | 10,908,233 – 10,908,333 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 79.71 |
Mean single sequence MFE | -23.64 |
Consensus MFE | -15.60 |
Energy contribution | -15.72 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.23 |
Mean z-score | -1.23 |
Structure conservation index | 0.66 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10908233 100 - 22224390 UCGCAUUUUUAGAAAAUGUAUUCAGUGCAGGGGCGACAUUCGCA---GCGGCAACGAAAGCGACAGCCAUAGCAUACCC----AUCCAUCUACC--UAUACACUUGCAC ..((((((.....)))))).....((((((((((.....((((.---.((....))...))))..)))((((.......----..........)--)))...))))))) ( -25.03) >DroGri_CAF1 1547 80 - 1 UCACUUUUUCAGAAAAUGUAUUCAGUGCAGGGGCGACAUUCGCA---GCGGCAACGAAAGCGACAGCCAUAAUACA--C----AAACAC-------------------- ...........(((......))).(((....(((.....((((.---.((....))...))))..)))......))--)----......-------------------- ( -16.00) >DroSim_CAF1 6285 100 - 1 UCGCAUUUUUAGAAAAUGUAUUCAGUGCAGGGGCGACAUUCGCA---GCGGCAACGAAAGCGACAGCCAUAGCAUACCC----AUCCAUCCACC--UAUACACUUGCAC ..((((((.....)))))).....((((((((((.....((((.---.((....))...))))..)))((((.......----..........)--)))...))))))) ( -25.03) >DroEre_CAF1 4964 95 - 1 UCGCAUUUUUAGA-AAUGUAUUCAGUGCAGGGGCGACAUUCGCA---GCGGCAACGAAAGCGACAGCCAUAGCAU--------ACCCAUCCACC--CACACACUUGCAC ..((((((....)-))))).....((((((((((.....((((.---.((....))...))))..)))...(...--------...).......--......))))))) ( -23.80) >DroYak_CAF1 6831 104 - 1 UCGCAUUUUUAGAAAAUGUAUUCAGUGCAGGGGCGACAUUCGCA---GCGGCAACGAAAGCGACAGCCAUAGCAUAUCUCUAUACCCAUCCACC--CACACACUUGCAC ..((((((.....)))))).....((((((((((.....((((.---.((....))...))))..)))((((.......))))...........--......))))))) ( -26.00) >DroAna_CAF1 7374 97 - 1 ----A-UUUUGGAAAAUGUAUUCAGUGCAGGGGCGACAUUCGCAUUUGCGGCAACGAAACCGACAGCCAUAGCGAC-------UGUCAUCGCCCAACACACACUCGCAC ----.-..................(((...((((((..(((((....))(....))))...(((((.(.....).)-------)))).))))))..))).......... ( -26.00) >consensus UCGCAUUUUUAGAAAAUGUAUUCAGUGCAGGGGCGACAUUCGCA___GCGGCAACGAAAGCGACAGCCAUAGCAUA__C____ACCCAUCCACC__CACACACUUGCAC ........................((((...(((.....((((.....((....))...))))..)))...)))).................................. (-15.60 = -15.72 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:48 2006