Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,896,163 – 10,896,263 |
Length | 100 |
Max. P | 0.997757 |
Location | 10,896,163 – 10,896,263 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 88.32 |
Mean single sequence MFE | -40.94 |
Consensus MFE | -31.86 |
Energy contribution | -34.90 |
Covariance contribution | 3.04 |
Combinations/Pair | 1.14 |
Mean z-score | -3.58 |
Structure conservation index | 0.78 |
SVM decision value | 2.92 |
SVM RNA-class probability | 0.997757 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10896163 100 + 22224390 AUGGUCCAGGGGGAUUAUCAGGACCCAGGACUCUGGAUGCUGGAUUCUGGAUUCUGGAUGCCAGAUUUGGGUCUUGGUCUGGGUCUGGACUGGAUCUGGG ..(((((((..((((((((((((((((((..(((((...(..((........))..)...))))))))))))))))))...)))))...))))))).... ( -44.80) >DroSec_CAF1 50243 100 + 1 AUGGUCCAGGGGGAUUAUCAGGACCCAGGACUCUGAAUGCUGGAUGCUGGAUUCUGGAUGCCAGAUUUGGGUCUUGGUCUGGGUCUGGACUGGAUCUGGG ..(((((((..(((((....(((((.(((((.(..(((.((((...(..(...)..)...)))))))..))))))))))).)))))...))))))).... ( -41.40) >DroSim_CAF1 53375 100 + 1 AUGGUCCAGGGGGAUUAUCAGGACCCAGGACUCUGGAUGCUGGAUGCUGGAUUCUGGAUGCCAGAUUUGGGUCUUGGUCUGGGUCUGGACUGGAUCUGGG ..(((((((..((((((((((((((((((..(((((...(..((........))..)...))))))))))))))))))...)))))...))))))).... ( -44.80) >DroEre_CAF1 26937 87 + 1 AUGGUCCAGGGAGAUUAUCAGCGCCCAGGACGCUGCAUG-------CAGGAUUCUGGAUGCCAGAUUUGGGUCUGGGU------CUGGACUGGAUUUGGG ..(((((((..((((..((((.(((((((...((((((.-------(((....))).))).))).)))))))))))))------))...))))))).... ( -33.00) >DroYak_CAF1 50708 93 + 1 AUGGUCCAGGGGGAUUAUCAAGACCCAGGACUCUGGAUG-------CUGGAUUCUAGAUGCCAGAUUUGGGUCUGGGUCUGAGUCUGGACUGGAUCUGGG ..(((((((..(((((....((((((((.((.(..(((.-------((((..........)))))))..))))))))))).)))))...))))))).... ( -40.70) >consensus AUGGUCCAGGGGGAUUAUCAGGACCCAGGACUCUGGAUGCUGGAU_CUGGAUUCUGGAUGCCAGAUUUGGGUCUUGGUCUGGGUCUGGACUGGAUCUGGG ..(((((((..((((((((((((((((((..(((((...(((((........)))))...))))))))))))))))))...)))))...))))))).... (-31.86 = -34.90 + 3.04)
Location | 10,896,163 – 10,896,263 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 88.32 |
Mean single sequence MFE | -26.46 |
Consensus MFE | -19.37 |
Energy contribution | -20.31 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.05 |
Mean z-score | -3.03 |
Structure conservation index | 0.73 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10896163 100 - 22224390 CCCAGAUCCAGUCCAGACCCAGACCAAGACCCAAAUCUGGCAUCCAGAAUCCAGAAUCCAGCAUCCAGAGUCCUGGGUCCUGAUAAUCCCCCUGGACCAU ..........((((((...................(((((...)))))..........(((.((((((....)))))).))).........))))))... ( -25.50) >DroSec_CAF1 50243 100 - 1 CCCAGAUCCAGUCCAGACCCAGACCAAGACCCAAAUCUGGCAUCCAGAAUCCAGCAUCCAGCAUUCAGAGUCCUGGGUCCUGAUAAUCCCCCUGGACCAU .((((.....(((..((((((((((..........(((((...))))).....((.....)).....).)).)))))))..))).......))))..... ( -26.10) >DroSim_CAF1 53375 100 - 1 CCCAGAUCCAGUCCAGACCCAGACCAAGACCCAAAUCUGGCAUCCAGAAUCCAGCAUCCAGCAUCCAGAGUCCUGGGUCCUGAUAAUCCCCCUGGACCAU .((((.....(((..((((((((((..........(((((...))))).....((.....)).....).)).)))))))..))).......))))..... ( -26.10) >DroEre_CAF1 26937 87 - 1 CCCAAAUCCAGUCCAG------ACCCAGACCCAAAUCUGGCAUCCAGAAUCCUG-------CAUGCAGCGUCCUGGGCGCUGAUAAUCUCCCUGGACCAU ..........((((((------..(((((......)))))(((.(((....)))-------.)))((((((.....)))))).........))))))... ( -27.50) >DroYak_CAF1 50708 93 - 1 CCCAGAUCCAGUCCAGACUCAGACCCAGACCCAAAUCUGGCAUCUAGAAUCCAG-------CAUCCAGAGUCCUGGGUCUUGAUAAUCCCCCUGGACCAU ..........((((((.((.(((.(((((......)))))..))))).(((.((-------.((((((....)))))))).))).......))))))... ( -27.10) >consensus CCCAGAUCCAGUCCAGACCCAGACCAAGACCCAAAUCUGGCAUCCAGAAUCCAG_AUCCAGCAUCCAGAGUCCUGGGUCCUGAUAAUCCCCCUGGACCAU ..........((((((........((.((((((..(((((...))))).....((.....))...........)))))).)).........))))))... (-19.37 = -20.31 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:45 2006