Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,891,475 – 10,891,567 |
Length | 92 |
Max. P | 0.568804 |
Location | 10,891,475 – 10,891,567 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 77.64 |
Mean single sequence MFE | -16.42 |
Consensus MFE | -4.85 |
Energy contribution | -5.69 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.07 |
Mean z-score | -1.84 |
Structure conservation index | 0.30 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568804 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10891475 92 - 22224390 AAAAGCACUGGUUAAUCCACUAUAAAU---------------UGAUUAACUUCAUUUUAAUACGCUUUCCGCGGGUAUUUUAAUAUUAUUUGCUA-----------CCUGCAGUUAUC .(((((..(((.....)))...((((.---------------(((......))).))))....)))))..(((((((...(((......))).))-----------)))))....... ( -17.90) >DroSec_CAF1 45454 92 - 1 AAAAGCACUGGUUAAUCCACUACAAAU---------------UGAUUAACUUAAUUUUAAUACUCUUUCCGCGGAUAUUUUAAUAUUAUUUGCUA-----------CCUACAGUAAUC ......(((((((((((..........---------------.)))))))....................(((((((.........)))))))..-----------....)))).... ( -13.50) >DroSim_CAF1 48450 106 - 1 AAAAGCACUGGUUAAUCCACUAUAAAUUGAUUAACUAUAAAUUGAUUAACUUAAUCUUAAUACGCUUUCCGCGG-UAUUUUAAUAUUAUUUGCUA-----------CCUACAGUUAUC ...((((.(((((((((...........)))))))))..............((((.((((..(((.....))).-....)))).))))..)))).-----------............ ( -14.00) >DroEre_CAF1 22390 98 - 1 AAAUGCACUGAUUAAACCACUAUAAAU---------------UGAUUAACUUCAUUUUAAUACGCUUUCCGCGGGUACUUUCAUAUUAUUUCCUG-----CAGUUAGCUGUACUAAAU ...((((((((((.........((((.---------------(((......))).))))...........(((((................))))-----))))))).))))...... ( -15.99) >DroYak_CAF1 46009 103 - 1 AAAAGCACUGGUUAAUCCACUAUAAAU---------------UGAUUAACUCCAUUAUUAUACGCUUUCUGCGGGUGUUUCAAUAUUAUUUACUAGGUACUAUUUACCUGCAAUAAUC ..(((((((((((((((..........---------------.))))))))...........(((.....))))))))))....((((((...((((((.....)))))).)))))). ( -20.70) >consensus AAAAGCACUGGUUAAUCCACUAUAAAU_______________UGAUUAACUUCAUUUUAAUACGCUUUCCGCGGGUAUUUUAAUAUUAUUUGCUA___________CCUGCAGUAAUC ......(((((((((((..........................)))))))............(((.....))).....................................)))).... ( -4.85 = -5.69 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:40 2006