Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,206,078 – 1,206,175 |
Length | 97 |
Max. P | 0.979249 |
Location | 1,206,078 – 1,206,175 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 76.92 |
Mean single sequence MFE | -20.05 |
Consensus MFE | -11.07 |
Energy contribution | -11.85 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.18 |
Mean z-score | -2.55 |
Structure conservation index | 0.55 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979249 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1206078 97 - 22224390 GACCUAACCUCAAAAAUACAGCCC-----AACAAUAUUCGGUUAAAUUCCAGAUCCGAAAUCACCCACACC--------AAGUGGGCCUAGGA-CUUGACCUGCCCACACC ........................-----.......(((((.............)))))............--------..((((((..(((.-.....)))))))))... ( -18.32) >DroSec_CAF1 15737 97 - 1 AACCUAACCUCAAGGCUACAGCCC-----AACAAUAUUCGGUUAAAUUCCAGAUCAGAAAUCACCCACACC--------AAGUGGGCCUAGGA-CUUGACCCGCCCACAUC .............(((....))).-----..........((((((..(((.(((.....))).(((((...--------..)))))....)))-.)))))).......... ( -20.60) >DroSim_CAF1 8318 97 - 1 AACCUAACCUCAAGGCUACAGCCC-----AACAAUAUUCGGUUAAAUUCCAGAUCAGAAAUCACCCACACC--------AAGUGGGCCUAGGA-CUUGACCCGCCCACAUC .............(((....))).-----..........((((((..(((.(((.....))).(((((...--------..)))))....)))-.)))))).......... ( -20.60) >DroEre_CAF1 16404 97 - 1 CACCUAACCUCAAAGCUACAGCCC-----AACAAUAUUCGGUUAAAUUCCAGAUCAGAUAUCACCCACAAC--------AAGUGGGUCUAGGA-CUUGACCUGCCCACAUC ..............((....))..-----..........((((((..(((.(((.....)))((((((...--------..))))))...)))-.)))))).......... ( -18.70) >DroYak_CAF1 20409 97 - 1 CACCUAACCUCAAAGCUACAACCC-----AGCAAUAUUCGGUUAAAUUCCGGAACAGAUAUCACCCACAAC--------AAGUGGGUCUAGGA-CUUGACCUGCCCACAAC ..((((...((...(((.......-----)))....(((((.......)))))...))....((((((...--------..)))))).)))).-................. ( -19.40) >DroMoj_CAF1 31436 103 - 1 CCUAUAACCUCAAAUCUAA-GCCAAUAGAACUAAUAUACAGUGGAGUUUUG--UC--AUAUUCCCAGCAAAACUAAAUACAGCAGGUAUAUGAGGUUGUCCCG---AUAGC ...((((((((...((((.-.....))))....((((((.(((.(((((((--(.--.........))))))))...))).....))))))))))))))....---..... ( -22.70) >consensus CACCUAACCUCAAAGCUACAGCCC_____AACAAUAUUCGGUUAAAUUCCAGAUCAGAAAUCACCCACAAC________AAGUGGGCCUAGGA_CUUGACCCGCCCACAUC .......................................((((((..(((.(((.....))).(((((.............)))))....)))..)))))).......... (-11.07 = -11.85 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:03 2006