Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,887,360 – 10,887,460 |
Length | 100 |
Max. P | 0.994817 |
Location | 10,887,360 – 10,887,460 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 82.23 |
Mean single sequence MFE | -26.02 |
Consensus MFE | -22.30 |
Energy contribution | -22.55 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.68 |
Structure conservation index | 0.86 |
SVM decision value | 2.51 |
SVM RNA-class probability | 0.994817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10887360 100 + 22224390 CAGCAGAGUGGCAAAUAUUUGCCGCAUAGGCAAACUUGUGCCACUGCCCCAGGACAUC---------------CCAUCCCGUUCCAAACCUAUCUAUCCACUUGCACGUCCACAU ..(((((((((((....((((((.....))))))....)))))))......((.....---------------))..........................)))).......... ( -25.30) >DroSec_CAF1 41261 115 + 1 CAGCAGAGUGGCAAAUAUUUGCCGCAUAGGCAAACUUGUGCCACUGCCUCAGGACAUCGCAUCCUAACCCAUCCCAACCCGCUCCAACCCUAUCCAUCCACUUGCACGUCCACAU ..((((.(((((((....)))))))...((((......)))).))))....((((...(((.........................................)))..)))).... ( -27.48) >DroSim_CAF1 44234 115 + 1 CAGCAGAGUGGCAAAUAUUUGCCGCAUAGGCAAACUUGUGCCACUGCCCCAGGACAUCGCAUCCUAAUCCAUCCCAACCCGCUCCAACCCUAUCCAUCCACUUGCACGUCCACAU ..((((.(((((((....)))))))...((((......)))).))))....((((...(((.........................................)))..)))).... ( -27.48) >DroEre_CAF1 18232 104 + 1 CAGCUGAGUGGGAAAUAUUUGCCGCAUAGGCAAACUUGUGCCACUGCCCCAGGACACACCACC------C-----AUCCCAUCCCACCCGAUUCCAUCCACAUGCACGUCCACGA ..((((.((((((....((((((.....))))))..((((((.........)).)))).....------.-----......))))))..(((...)))..)).)).((....)). ( -23.80) >consensus CAGCAGAGUGGCAAAUAUUUGCCGCAUAGGCAAACUUGUGCCACUGCCCCAGGACAUCGCAUC______C___CCAACCCGCUCCAACCCUAUCCAUCCACUUGCACGUCCACAU ..((..(((((((....((((((.....))))))....)))))))))....((((....................................................)))).... (-22.30 = -22.55 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:32 2006