Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,881,960 – 10,882,058 |
Length | 98 |
Max. P | 0.548902 |
Location | 10,881,960 – 10,882,058 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 97.04 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -28.74 |
Energy contribution | -29.18 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.08 |
Structure conservation index | 0.97 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10881960 98 + 22224390 ACUCUUAGCCCGGGAUAUGGCCAUUAAGUUGGCCUUUUUACGACCACAGUAGUCCUAGAUGGUGCGUAUGUCUGUCGGCCAGGACAUGCCCACUAUGC .........(..((((..(((((......)))))....(((.......)))))))..)((((((.((((((((........)))))))).)))))).. ( -32.40) >DroSec_CAF1 36480 98 + 1 ACUCUUAGCCCGGGAUAUGGCCAUUAAGUUGGCCUUUUUACGACCACAGUAGUUCUAGAUGGUGCGUAUGUCUGUCGGCCAGGACAUGCCCACUAUGC .........(..((((..(((((......)))))....(((.......)))))))..)((((((.((((((((........)))))))).)))))).. ( -29.50) >DroSim_CAF1 37832 98 + 1 ACUCUUAGCCCGGGAUAUGGCCAUUAAGUUGGCCUUUUUACGACCACAGUAGUCCUAGAUGGUGCGUAUGUCUGUCGGCCAGGACAUGCCCACUAUGC .........(..((((..(((((......)))))....(((.......)))))))..)((((((.((((((((........)))))))).)))))).. ( -32.40) >DroEre_CAF1 12365 98 + 1 ACUCUUAGCCCGGGAUAUGGCCAUUAAGUUGGCCUUUUUACGACCACAGUAGUCCUAGAUGGUGCGUAUGUCUGUCUGCCAGGACAUGCCCACUAUAC .........(..((((..(((((......)))))....(((.......)))))))..)((((((.((((((((........)))))))).)))))).. ( -32.40) >DroYak_CAF1 36767 98 + 1 ACUCUUAGCCCGGGAUAUGGCCAUUAAGUUGGGCUUUUUACGACCACAGUAGUCCUAGAUGUUGCGUAUGUCUGUCUGCCAGGACAUGCCCACUACUC .......(((........))).....(((.((((....(((.......)))(((((((((((.....)))))).......)))))..))))))).... ( -21.41) >consensus ACUCUUAGCCCGGGAUAUGGCCAUUAAGUUGGCCUUUUUACGACCACAGUAGUCCUAGAUGGUGCGUAUGUCUGUCGGCCAGGACAUGCCCACUAUGC .........(..((((..(((((......)))))....(((.......)))))))..)((((((.((((((((........)))))))).)))))).. (-28.74 = -29.18 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:31 2006