Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,874,021 – 10,874,113 |
Length | 92 |
Max. P | 0.886326 |
Location | 10,874,021 – 10,874,113 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -21.80 |
Consensus MFE | -18.78 |
Energy contribution | -18.58 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.09 |
Mean z-score | -1.53 |
Structure conservation index | 0.86 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886326 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10874021 92 + 22224390 UUUGCUGAAUUAGCUCGAUAUCGGUUUAGAUGCUCCAGCCGAUUAAUCAGCUAAGACUUACCCGAGAUGACCUUUUCCCUUUUGGCAUCCUG ..(((..((((((((.((((((((((..........)))))))..))))))))).........((((......))))...))..)))..... ( -21.30) >DroSec_CAF1 28773 91 + 1 UUUGCUGAAUUAGCUCGAUAUCGGUUUAGAUGCUCCAGCCGAUUAAUCAGCUAAGACUUACCCGAGUUGACCUUUUCCCU-UUGGCAUUCUG ..(((..((((((((.((((((((((..........)))))))..)))))))))(((((....)))))...........)-)..)))..... ( -22.20) >DroSim_CAF1 30172 91 + 1 UUUGCUGAAUUAGCUCGAUAUCGGUUUAGAUGCUCCAGCCGAUUAAUAAGCUAAGACUUACCCGAGUUGACCUUUUCCCU-UUGGCAGCCUG .((((..((((((((....(((((((..........))))))).....))))))(((((....)))))...........)-)..)))).... ( -21.10) >DroEre_CAF1 4939 91 + 1 UUUGCUGAAUUAGCUCAAUAUCGGUGUAGAUGCUCCAGCCGAUUAAUCAGCUAAGACUUUUCCAAGUUGACCUUUUCCCU-UUGGCAUCCAA ..(((..((((((((....((((((...(.....)..)))))).....))))))(((((....)))))...........)-)..)))..... ( -20.40) >DroYak_CAF1 28355 91 + 1 UUUGCUGAAUUAGCUCGAUAUCGGUUUAGAUGCUUCAGCCGAUUAAUCAGCUAAGACUUUUCCAAGUUGACCUUUUCCCU-UUAGCAGCCAG .((((((((((((((.((((((((((..((....)))))))))..)))))))))(((((....)))))...........)-))))))).... ( -24.00) >consensus UUUGCUGAAUUAGCUCGAUAUCGGUUUAGAUGCUCCAGCCGAUUAAUCAGCUAAGACUUACCCGAGUUGACCUUUUCCCU_UUGGCAUCCUG ..((((((.((((((....((((((............)))))).....))))))(((((....))))).............))))))..... (-18.78 = -18.58 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:30 2006