Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,871,912 – 10,872,006 |
Length | 94 |
Max. P | 0.572776 |
Location | 10,871,912 – 10,872,006 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 80.30 |
Mean single sequence MFE | -31.33 |
Consensus MFE | -22.87 |
Energy contribution | -22.87 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.16 |
Mean z-score | -1.49 |
Structure conservation index | 0.73 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572776 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10871912 94 + 22224390 ------------AAGAGGGGGGGCGUGGAAAGAGGGGUAUUUUGUG--UGGGGGG---GGGGGGCGUGACACUGCUAGACCAGGCCUCGCAAACAAAUAAGCCAAAUUAAU ------------.....................((..(((((..((--(((((..---((..((((......))))...))...)))))))...)))))..))........ ( -22.30) >DroSec_CAF1 26640 108 + 1 ACAAACGCACAGAUAAUCAGGGGCGUGGAAAGAGGGGUGUUUUUGGGGCGUGGGG---UAGGGGCGUGGCACUGCUAGACCAGGCCCCACAAACAAAUAAGCCAAAUUAAU ....((((.(.(.....).)..))))((......(..(((((.((((((.(((..---(((.((.......)).)))..))).)))))).)))))..)...))........ ( -34.30) >DroSim_CAF1 28055 111 + 1 ACAAACGCACUGAUAAUCAGGGGCGUGGAAAGAGGGGUGUUUUUGGGGCGUGGGGGUUUAGGGGCGUGGCACUGCUAGACCAGGCCCCACAAACAAAUAAGCCAAAUUAAU ....((((.(((.....)))..))))((......(..(((((.((((((.....(((((((.((.......)).)))))))..)))))).)))))..)...))........ ( -37.40) >consensus ACAAACGCAC_GAUAAUCAGGGGCGUGGAAAGAGGGGUGUUUUUGGGGCGUGGGG___UAGGGGCGUGGCACUGCUAGACCAGGCCCCACAAACAAAUAAGCCAAAUUAAU ...................(((((.(((....((.((((((......(((..............))))))))).))...))).)))))....................... (-22.87 = -22.87 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:26 2006