Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,870,008 – 10,870,104 |
Length | 96 |
Max. P | 0.909762 |
Location | 10,870,008 – 10,870,104 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 74.95 |
Mean single sequence MFE | -25.31 |
Consensus MFE | -13.91 |
Energy contribution | -15.67 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.18 |
Mean z-score | -1.94 |
Structure conservation index | 0.55 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.909762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10870008 96 + 22224390 UUCAGUCAUCCAUCUCAAAACGCA-------UACCAGGGACUUUUAGCAAAUCUCUCCAGCAUAAGCCGAUGUCUCAAUUCUGAUCUGGUGAUGGAUGGCCUU ....((((((((((..........-------.(((((((.(((...((...........))..)))))...(((........))))))))))))))))))... ( -24.10) >DroSec_CAF1 24331 103 + 1 UGCAGUCAUCUAUCUCAAAACGCAUUCCCCAUGCCAGGGACUUUCAGCACAUCUCUCCACCAUAAGCCGAUGUCUCAAUUCUGAUCUGGUGAUGGAUGGCAUU ....(((((((((((((....((((.....))))..(((((..((.((.................)).)).)))))..........))).))))))))))... ( -25.93) >DroSim_CAF1 25564 103 + 1 UGCAGUCAUCUAUCUCAAAACGCAUUCCCCAUGCCAGGGACUUUCAGCAAAUCUCUCCACCAUAAGCCGAUGUCUCAAUUCUGAUCUGGUGAUGGAUGGCCUU ....(((((((((((((....((((.....))))..(((((..((.((.................)).)).)))))..........))).))))))))))... ( -25.03) >DroEre_CAF1 1006 101 + 1 UGCAGUCAUCCAUCUCAAAACGCAUCC-CCUUC-CAGGGACUUUCAGCAAAUCUCUGCAGCAUAAGCCGAUGUCUCAAUUGUGAUCUGGUGAUGGAUGGCCUU ....((((((((((.......((.(((-(....-..))))......(((......))).))....((((..(((.(....).))).))))))))))))))... ( -30.50) >DroYak_CAF1 24454 102 + 1 UGCAGUCAUCCAUCUCGAAACGCAUCC-CCUUCCCAGGGACAUUCAGCAAAUCUCUGCAGCAUAAGCCAAUGUCUCAAUUCUGAUCUGGUGAUGGAUGGCCUU ....((((((((((.......((...(-(((....)))).......(((......))).))....((((..(((........))).))))))))))))))... ( -30.80) >DroPer_CAF1 45679 75 + 1 UCAACAGCCCCCGCUCAA--C----------UGUGGGAAACCUUUACCAACUCCCUCGAAC---------------CAUCUUGAUAUGCUGAUGGGUGCCUU- (((.((((.(((((....--.----------.)))))..................((((..---------------....))))...)))).))).......- ( -15.50) >consensus UGCAGUCAUCCAUCUCAAAACGCAU_C_CC_UGCCAGGGACUUUCAGCAAAUCUCUCCAGCAUAAGCCGAUGUCUCAAUUCUGAUCUGGUGAUGGAUGGCCUU ....((((((((((.....................(((((...........))))).........((((..(((........))).))))))))))))))... (-13.91 = -15.67 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:22 2006