Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,867,352 – 10,867,447 |
Length | 95 |
Max. P | 0.922851 |
Location | 10,867,352 – 10,867,447 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 73.82 |
Mean single sequence MFE | -21.52 |
Consensus MFE | -3.78 |
Energy contribution | -5.90 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.94 |
Structure conservation index | 0.18 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922851 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10867352 95 + 22224390 UGCCU-GGCAAUUCAAUCUGCUA----ACUCCAUUUAGCAACCAAUCUGCGAGCCCAAGAUU-UACCCUUAAUCAGGCUUUU-GACGGAAUUUUCCGGCCAC ....(-(((...((((..(((((----(......))))))..........(((((...((((-.......)))).)))))))-))((((....)))))))). ( -23.50) >DroSec_CAF1 20990 95 + 1 UGCCU-GGCAAUUCAAUCUGCUA----ACUCCAUUUAGCAACCAAUCUGCUAGCCCAGGAUU-CACCCUUAAUCAGGCUUUG-GACGGAAUUUUCCGGCCAC .((((-((((........)))..----..(((..((((((.......))))))....)))..-..........)))))..((-(.((((....)))).))). ( -24.80) >DroSim_CAF1 22510 95 + 1 UGCCU-GGCAAUUCAAUCUGCUA----ACUCCAUUUAGCAACCAAUCUGCUAGCCCAGGAUU-CACCCUUAAUCAGGCUUUG-GACGGAAUUUUCCGGCCAC .((((-((((........)))..----..(((..((((((.......))))))....)))..-..........)))))..((-(.((((....)))).))). ( -24.80) >DroYak_CAF1 21127 97 + 1 ---CA-GGCAAUUCAAACUACUAACUAACUACAUUUACCAACCAAUCUGCGAGCCCAGAAUG-CAUCCUUAAUCAGACUUUGAGGCGGAAUUUUCCGGCCAC ---..-(((.................................((.((((......)))).))-...((((((.......))))))((((....))))))).. ( -16.90) >DroAna_CAF1 19618 83 + 1 UGCCAGGGCAAUAUGGGUUGCUA----AUUCCAUUAACCAGCCAAUCUCCUGCCCCU-AAUGGAACACUUUUCCUCGCUUCU-CUAGGA------------- .((.((((((((....)))))..----.((((((((..(((........)))....)-))))))).......))).))....-......------------- ( -17.60) >consensus UGCCU_GGCAAUUCAAUCUGCUA____ACUCCAUUUAGCAACCAAUCUGCUAGCCCAGGAUU_CACCCUUAAUCAGGCUUUG_GACGGAAUUUUCCGGCCAC .((((.((((........)))).......................((((......))))...............)))).......((((....))))..... ( -3.78 = -5.90 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:20 2006