Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,866,709 – 10,866,829 |
Length | 120 |
Max. P | 0.607794 |
Location | 10,866,709 – 10,866,829 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.53 |
Mean single sequence MFE | -28.05 |
Consensus MFE | -25.19 |
Energy contribution | -25.50 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.67 |
Structure conservation index | 0.90 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10866709 120 - 22224390 AAUGCUGUACUACUUUAUGGAAUAGUACGUAUGUAUUUAUGUUCGCAUGGUGAGAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAU .((((.(..((((((((((((....((((..(((((((.(((((............))))).)))))))...)))).)))...(....)..............)))))))))..).)))) ( -29.50) >DroSec_CAF1 20349 120 - 1 AAUGCUGUACUACUUUAUGGAAUAGUACGUCUGUAUUUAUGUUCGCAUGUUGAAAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAU .((((.(..((((((((((((....((((..(((((((.(((((............))))).)))))))...)))).)))...(....)..............)))))))))..).)))) ( -29.50) >DroSim_CAF1 21873 120 - 1 AAUGCUGUACUACUUUAUGGAAUAGUACGUAUGUAUUUAUGUUCGCAUGUUGAAAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAU .((((.(..((((((((((((....((((..(((((((.(((((............))))).)))))))...)))).)))...(....)..............)))))))))..).)))) ( -29.50) >DroYak_CAF1 20503 120 - 1 AAUGCUGUACAACGUUAUAGAAUAGUACGUAUGUAUUUAUGCUCGCAUGGUGAAAGGGACGCAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAU .((((.......((((.........((((..(((((((.(((((.(.....)...))).)).)))))))...))))..........))))....((((((........))))))..)))) ( -23.71) >consensus AAUGCUGUACUACUUUAUGGAAUAGUACGUAUGUAUUUAUGUUCGCAUGGUGAAAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAU .((((............((((....((((..(((((((.(((((............))))).)))))))...)))).))))..(....).....((((((........))))))..)))) (-25.19 = -25.50 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:19 2006