Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,866,521 – 10,866,630 |
Length | 109 |
Max. P | 0.539287 |
Location | 10,866,521 – 10,866,630 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 85.08 |
Mean single sequence MFE | -37.52 |
Consensus MFE | -26.69 |
Energy contribution | -29.38 |
Covariance contribution | 2.69 |
Combinations/Pair | 1.07 |
Mean z-score | -1.47 |
Structure conservation index | 0.71 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539287 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10866521 109 - 22224390 GCAUGUGGGUAUAAGUUGGUGGAGCAGCAGAAGCGGCGGAAGCUGUGCAAGCUGCUGGGA-CGAAGGACGAGGCAAUUCUCAUGAAUAUUAUUACGCAUACGCCCCGUGC (((((.(((..((.((((((((((((((....(((((....)))))....))))))....-........((((....)))).......)))))).)).))..)))))))) ( -39.00) >DroSec_CAF1 20161 109 - 1 GCAUGUGGGGAUAAGUUGGCGGAGCAGCAGGAGCGGCGGAAGCUGUGCAAGCUGCUGGGA-CGAGGGACGUGGCAAACCUCAUGAAUAUUAUUACGCAUACGCCCCGUGC ((((..((((....((..(((.((((((..(.(((((....))))).)..))))))....-.((((...........)))).............)))..)).)))))))) ( -42.50) >DroSim_CAF1 21685 109 - 1 GCAUGUGGGGAUAAGUUGGCGGAGCAGCAGGAGCGGCGGAAGCUGUGCAAGCUGCUGGGA-CGAGGGACGUGGCAAACCUCAUGAAUAUUAUUACGCAUACGCCCCGUGC ((((..((((....((..(((.((((((..(.(((((....))))).)..))))))....-.((((...........)))).............)))..)).)))))))) ( -42.50) >DroYak_CAF1 20315 101 - 1 GCAUGUGGGAAUAAGUGGGAGAAGCC---------AAUGGAGGUGUGGGAGCUGCAGGAAGCGAAGGACGAGACUAACCUCAUGAAUAUUAUUACGCAUACGCCCCGUGC (((((.(((......(((......))---------)......(((((.(.(((......))).......(((......))).............).))))).)))))))) ( -26.10) >consensus GCAUGUGGGGAUAAGUUGGCGGAGCAGCAGGAGCGGCGGAAGCUGUGCAAGCUGCUGGGA_CGAAGGACGAGGCAAACCUCAUGAAUAUUAUUACGCAUACGCCCCGUGC (((((.(((.....((..(((.((((((....(((((....)))))....))))))......((((...........)))).............)))..)).)))))))) (-26.69 = -29.38 + 2.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:18 2006