Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,865,872 – 10,865,981 |
Length | 109 |
Max. P | 0.615723 |
Location | 10,865,872 – 10,865,981 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.40 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -22.75 |
Energy contribution | -24.50 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.03 |
Mean z-score | -1.53 |
Structure conservation index | 0.77 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10865872 109 - 22224390 UUGCGGCAUAUUUCAUAGAGAUAUAUUUACAAUAAAGUGGCCGGAAGUCGGGAUCGGGAUAGGGAUUGGGAUCGGGAUUGCGAUUGGGCGGAAGCCCGAUGGUAUGGAA----------- ((.(((((((((((...)))))))...(((......))))))).))(((..((((..(((....)))..))))..)))(((.(((((((....))))))).))).....----------- ( -34.10) >DroSec_CAF1 19522 103 - 1 AUGCGGCAUAUUUCAUAGAGAUAAAUUUACAAUAAAGUGGCCGGAAGUCGGGAUCGGGA------UUGGGAUUGGGUUUGCGUUUGGGCGGAAGCCCGAUGGUAUGGAA----------- (((((((.((((((...))))))....(((......)))))).(((.((((..(((...------.)))..)))).)))))))((((((....))))))..........----------- ( -26.30) >DroSim_CAF1 21038 103 - 1 AUGCGGCAUAUUUCAUAGAGAUAUAUUUACAAUAAAGUGGCCGGAAGUCGGGAUCGGGA------UUGGGAUUGGGUUUGCGUUUGGGCGGAAGCCCGAUGGUAUGGAA----------- ((((((((((((((...)))))))...(((......)))))).(((.((((..(((...------.)))..)))).)))))))((((((....))))))..........----------- ( -27.30) >DroYak_CAF1 19560 114 - 1 UUGCGGCAUAUUUCAUAGAGAUAUAUUUACAAUAAAGUGGCCGGAAGUCGGGAUCAGCA------UCGGGAUCGGGAUUGGGAUGGUGCGGAAGCCCGAUGGAAUGGAACCUAGUAAAGU ((.(((((((((((...)))))))...(((......))))))).))...((..(((.((------(((((.((.(.(((.....))).).))..)))))))...)))..))......... ( -30.80) >consensus AUGCGGCAUAUUUCAUAGAGAUAUAUUUACAAUAAAGUGGCCGGAAGUCGGGAUCGGGA______UUGGGAUCGGGAUUGCGAUUGGGCGGAAGCCCGAUGGUAUGGAA___________ .(.(((((((((((...)))))))...(((......))))))).)..((((..((((........))))..))))...(((.(((((((....))))))).)))................ (-22.75 = -24.50 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:16 2006