Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,865,473 – 10,865,572 |
Length | 99 |
Max. P | 0.711117 |
Location | 10,865,473 – 10,865,572 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 93.94 |
Mean single sequence MFE | -15.39 |
Consensus MFE | -13.85 |
Energy contribution | -13.63 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.94 |
Structure conservation index | 0.90 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711117 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10865473 99 + 22224390 AUAUAACUAGUGUUCAUCCCUUGUAGACCCAAAGAUUUGUGUUUAAACAAGUACUUAACCCUAGUUAAGAAUUUACAUCAUCUCUAAGCAAAUCUAAUU ...(((((((.(((.....(((((((((.(((....))).))))..))))).....))).)))))))................................ ( -14.70) >DroSec_CAF1 19128 99 + 1 AUAUAACUAGCGCUCAACCCUUUAAGCUCGAAAGAUUUGUGUUUAAACAAGUACUUAACCCUAGUUAAGAACUUACAUCAUCUCUAAGCAAAUCUAAUU ......(.(((..............))).)..((((((((((....))((((.((((((....)))))).)))).............)))))))).... ( -15.74) >DroSim_CAF1 20639 99 + 1 AUAUAACUAGCGCUCAACCCUUUAAGCUCGAAAGAUUUGUGUUUAAACAAGUACUUAACCCUAGUUAAGAACUUACAUCAUCUCUAAGCAAAUCUAAUU ......(.(((..............))).)..((((((((((....))((((.((((((....)))))).)))).............)))))))).... ( -15.74) >consensus AUAUAACUAGCGCUCAACCCUUUAAGCUCGAAAGAUUUGUGUUUAAACAAGUACUUAACCCUAGUUAAGAACUUACAUCAUCUCUAAGCAAAUCUAAUU ................................((((((((((....))((((.((((((....)))))).)))).............)))))))).... (-13.85 = -13.63 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:15 2006