Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,861,441 – 10,861,543 |
Length | 102 |
Max. P | 0.511528 |
Location | 10,861,441 – 10,861,543 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 93.31 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -19.17 |
Energy contribution | -19.18 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.04 |
Mean z-score | -1.48 |
Structure conservation index | 0.84 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10861441 102 - 22224390 CGCACACACAAACACAUGUGUACUGGCGCAUUAUUGAGUCGAUUUUGCGGUUUUUGGGCAAAAAGAAGCACAGCGAAAUAAAAUAAAUAAGGGAAAUGUGCA .(((((((((......))))).(((((.((....)).))).(((((((.((((((........))))))...)))))))..........))......)))). ( -24.80) >DroSec_CAF1 15164 92 - 1 CAC----------ACAUGUGUACUGGCGCAUUAUUGAGUCGAUUUUGCGGUUUUUGGGCAAAAAGAAGCACAGCGGAAUAAAAUAAAUAAGGGAAAUGUGCA ..(----------((((((((....)))).(((((......(((((((.((((((........))))))...)))))))......))))).....))))).. ( -20.10) >DroSim_CAF1 17194 98 - 1 CACACACA----CACAUGUGUACUGGCGCAUUAUUGAGUCGAUUUUGCGGUUUUUGGGCAAAAAGAAGCACAGCGGAAUAAAAUAAAUAAGGGAAAUGUGCA .(((((..----....)))))....((((((((((......(((((((.((((((........))))))...)))))))......))))......)))))). ( -21.80) >DroYak_CAF1 15386 96 - 1 CGCACA------CACAUGUGUACUGGCGCAUUAUUGAGUCGAUUUUGCGGUUUUUGGGCAAAAAGAAGCACAGCGAAAUAAAAUAAAUAAGGGAAAUGUGCA .(((((------....(((((....)))))(((((......(((((((.((((((........))))))...)))))))......)))))......))))). ( -24.50) >consensus CACACA______CACAUGUGUACUGGCGCAUUAUUGAGUCGAUUUUGCGGUUUUUGGGCAAAAAGAAGCACAGCGAAAUAAAAUAAAUAAGGGAAAUGUGCA ............(((((((((....)))).(((((......(((((((.((((((........))))))...)))))))......))))).....))))).. (-19.17 = -19.18 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:06 2006