Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,858,435 – 10,858,526 |
Length | 91 |
Max. P | 0.558430 |
Location | 10,858,435 – 10,858,526 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 93.59 |
Mean single sequence MFE | -23.98 |
Consensus MFE | -19.71 |
Energy contribution | -19.65 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -1.62 |
Structure conservation index | 0.82 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558430 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10858435 91 + 22224390 GCUCGAAGUGAUGCACUGCAAAUAAGUGGGCAAAUUUAUUCGCAUCCCCAGGCGAUGCUUCUGAUCACUUAGCAAUUUUAUGCUCAUAGAA (((..(((((((((.(..(......)..)))..........((((((....).))))).....))))))))))..((((((....)))))) ( -23.20) >DroSec_CAF1 12227 91 + 1 GCUCGGAGUGAUGCACUGCAAAUAAAUGGGCAAAUUUAUUGGCAUCCCCAGGCGAUGCUUCUGAGCAUUUAGCAAUUUUAUGCUCAUAGAA ((..((.(.(((((......(((((((......))))))).))))))))..))........(((((((..(....)...)))))))..... ( -24.60) >DroSim_CAF1 14273 91 + 1 GCUCGGAGUGAUGCACUGCAAAUAAAUGGGCAAAUUUAUUCGCAUCCCCAGGCGAUGCUUCUGAGCAUUUAGCAAUUUUAUGCUCAUAGAA ((((((((((.(((..(((.(((((((......))))))).))).......))).))).)))))))....((((......))))....... ( -23.50) >DroYak_CAF1 12498 91 + 1 GCUUGGAGUGAUGCACUGCAAAUAAAUGGACAAAUUUAUUCGCAUCCCCAGGCGAUGCUUCUGAACGUUUAGCAUUUUUAUGCUCAUGCAA ((((((.(.(((((......(((((((......))))))).))))))))))))((((((...........))))))....(((....))). ( -24.60) >consensus GCUCGGAGUGAUGCACUGCAAAUAAAUGGGCAAAUUUAUUCGCAUCCCCAGGCGAUGCUUCUGAGCAUUUAGCAAUUUUAUGCUCAUAGAA ((((((((((.(((..(((.(((((((......))))))).))).......))).)))))).))))....((((......))))....... (-19.71 = -19.65 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:05 2006