| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,852,556 – 10,852,668 |
| Length | 112 |
| Max. P | 0.691013 |
| Location | 10,852,556 – 10,852,668 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.37 |
| Mean single sequence MFE | -24.15 |
| Consensus MFE | -10.69 |
| Energy contribution | -12.49 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691013 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10852556 112 - 22224390 GCCGAUAAUGCUAAUGGAAAAAUCAAUCUGCGAUCUCAAUUGUGGC-AAAACUCAACAAAAACCAUGGCUGUUUAAAUUGCUAUAUUUGCGUUUUGCCAAUGGCAAACAAAAA------- ((((((...((..((.((....)).))..)).))).......((((-(((((.(((........(((((..........)))))..))).)))))))))..))).........------- ( -23.50) >DroSec_CAF1 6447 113 - 1 GCCGAUAAUGCUAAUGGAAAAAUCAAUCUGCGAUCUCAAUUGUGGCCAAAACUCAAAAAAAACCAUGGCUGUUCAAAUUGCUAUAUUUGCGUUUUGCCAUUGGCAAAAAAAAA------- ........(((((((((.((((((((...(((((.......(..((((.................))))..)....))))).....))).))))).)))))))))........------- ( -25.23) >DroSim_CAF1 6554 113 - 1 GCCGAUAAUGCUAAUGGAAAAAUCAAUCUGCGAUCUCAAUUGUGGCCAAAACUGAACAAAAACCAUGGCUGUUCAAAUUGCUAUAUUUGCGUUUUGCCAUUGGCAAACAAAAA------- ........(((((((((..........(..((((....))))..).((((((((((((...........))))))....((.......)))))))))))))))))........------- ( -26.40) >DroYak_CAF1 6577 110 - 1 -UCGAUAAUGCUGAUGGAAAAAUCAAUCUGCGAUCUCAAUUGUGGCG--AGCUGAACAAAAACCAGGUCUGUUCAAAUUGCAAUAUUUGCGUUUUGCCAACGGCAACCAAAAA------- -.......(((((.(((.((((((((...(((((....))))).(((--(..((((((...........))))))..)))).....))).))))).))).)))))........------- ( -24.60) >DroAna_CAF1 658 102 - 1 GCUGAUAAUGCUAAUGGAAAAGUCAAUCAGCGAUCGCAAAUAUGGCA--AAUCAAACAAACAUUUUGCCUCU-----------CAUUUGCAUUUUUCCCCC-----CCAAAAACAGUAGC ((((((...(((........)))..))))))....((((((..((((--((............))))))...-----------.))))))...........-----.............. ( -21.00) >consensus GCCGAUAAUGCUAAUGGAAAAAUCAAUCUGCGAUCUCAAUUGUGGCCAAAACUCAACAAAAACCAUGGCUGUUCAAAUUGCUAUAUUUGCGUUUUGCCAAUGGCAAACAAAAA_______ ........(((((.(((.((((((((...(((((..((..(((((.................)))))..)).....))))).....))).))))).))).)))))............... (-10.69 = -12.49 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:52 2006