Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,852,135 – 10,852,235 |
Length | 100 |
Max. P | 0.500000 |
Location | 10,852,135 – 10,852,235 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 82.07 |
Mean single sequence MFE | -28.82 |
Consensus MFE | -16.65 |
Energy contribution | -17.15 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.98 |
Structure conservation index | 0.58 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10852135 100 - 22224390 UCUCUGUCAGGCGCGCUGACAUUUGUCAA--AAGGAAGCCCCCA-AUCCCCGCCAGCCCGC-------CAUCCAACAUUGACAAAUGAAGCCGCAUUCUGCUGCCAUGAA ......(((((((.(((..((((((((((--..((......)).-......((......))-------.........)))))))))).))))((.....)).))).))). ( -25.40) >DroPse_CAF1 25924 104 - 1 UCAUUGUCAGGCACGCUGACAUUUGUCAA--A-GGCAGCCCCCAGAGCAACGCCAGCACUCCACAAGCAAUCCAGUAUUGACAAAUGAAGCCGCAUUC---UGGCAUGGA ((((.(((((((..(((..((((((((((--.-(((.((.......))...))).((.........)).........)))))))))).))).))...)---)))))))). ( -28.70) >DroSec_CAF1 6036 100 - 1 UCUCUGUCAGGCGCGCUGACAUUUGUCAA--AAGGAAGACCCCA-AUCCCCGCCAGCCCGC-------CAUCCAACAUUGACAAAUGAAGCCGCAUUCAGCUGCCAUGAA ......(((((((.(((((((((((((((--..((......)).-......((......))-------.........)))))))))).........))))))))).))). ( -26.40) >DroSim_CAF1 6140 100 - 1 UCUCUGUCAGGCGCGCUGACAUUUGUCAA--AAGGAAGCCCCCA-AUCCCCGCCAGCCCGC-------CAUCCAACAUUGACAAAUGAAGCCGCAUUCUGCUGCCAUGAA ......(((((((.(((..((((((((((--..((......)).-......((......))-------.........)))))))))).))))((.....)).))).))). ( -25.40) >DroYak_CAF1 6169 95 - 1 UCUCUGUCAGGCGCGGUGACAUUUGUCAAAAAAGGAUGCCCCCA-GCC--CGC-----UGG-------CAUCCAACAUUGACAAAUGAAGCCGCAUUCUGCUGCCAUGAA ......(((((((((((..((((((((((....(((((((...(-(..--..)-----)))-------)))))....))))))))))..)))))........))).))). ( -38.30) >DroPer_CAF1 26003 104 - 1 UCAUUGUCAGGCACGCUGACAUUUGUCAA--A-GGCAGCCCCCAGAGCAACGCCAGCACUCCACAAGCAAUCCAGUAUUGACAAAUGAAGCCGCAUUC---UGGCAUGGA ((((.(((((((..(((..((((((((((--.-(((.((.......))...))).((.........)).........)))))))))).))).))...)---)))))))). ( -28.70) >consensus UCUCUGUCAGGCGCGCUGACAUUUGUCAA__AAGGAAGCCCCCA_AUCCCCGCCAGCCCGC_______CAUCCAACAUUGACAAAUGAAGCCGCAUUCUGCUGCCAUGAA ..........(((.(((..((((((((((....((....................................))....)))))))))).))))))................ (-16.65 = -17.15 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:51 2006