Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,852,011 – 10,852,101 |
Length | 90 |
Max. P | 0.986047 |
Location | 10,852,011 – 10,852,101 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 80.10 |
Mean single sequence MFE | -28.49 |
Consensus MFE | -17.72 |
Energy contribution | -19.53 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.05 |
Mean z-score | -2.70 |
Structure conservation index | 0.62 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.986047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10852011 90 - 22224390 GCAGAUUCUGAUUCUGAUUCCGAUUCAGAUU------------------CAGAUACAGAUACGUAUACGAAUUCCGGAUCUGAAUCCAAGCGCAGAGUCACACACAAU ...(((((((.....(((((.(((((.((((------------------(..((((......))))..)))))..))))).)))))......)))))))......... ( -26.20) >DroSec_CAF1 5909 98 - 1 GCAGAUUCUGAUUCGGAUUCCGAUUCGGAUUCAG------AUUCAGAUACAGAUACAGAUACGGAUACGAAUUCCGGGUCUGAAUCCAAGCGCAGAGUCA----CAAU ...(((((((....((((((.(((((((((((..------((((..................))))..))).)))))))).)))))).....))))))).----.... ( -32.27) >DroSim_CAF1 6002 104 - 1 GCAGAUUCUGAUUCGGAUUCCGAUUCGGAUUCAGAUUCAGAUUCAGAUACAGAUACAGAUACGGAUACGAAUUCCGGGUCUGAAUCCAAGCGCAGAGUCA----CAAU ...(((((((..((((...))))...((((((((((((....((.......)).........(((.......))))))))))))))).....))))))).----.... ( -33.00) >DroYak_CAF1 6043 94 - 1 ----UUUCAGUUGCAGAUUCCGAUACUGAUUCCG------AUUCAGAUACAGAUACAGAUUCAGAUACGAAUUCCGAGUCGGAAUCCAAGCGCAGAGUCA----CAAU ----.....((((..(((((((.....(((((((------((((.((...........((((......)))))).)))))))))))....))..))))).----)))) ( -22.50) >consensus GCAGAUUCUGAUUCGGAUUCCGAUUCGGAUUCAG______AUUCAGAUACAGAUACAGAUACGGAUACGAAUUCCGGGUCUGAAUCCAAGCGCAGAGUCA____CAAU ...(((((((....((((((.((((((((...........................................)))))))).)))))).....)))))))......... (-17.72 = -19.53 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:50 2006