Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,851,444 – 10,851,564 |
Length | 120 |
Max. P | 0.845476 |
Location | 10,851,444 – 10,851,564 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.21 |
Mean single sequence MFE | -23.10 |
Consensus MFE | -21.23 |
Energy contribution | -21.23 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.92 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10851444 120 + 22224390 ACUGCCACACACACACACGCACAGAUAUUUUCUCCCAACAACUCGCUUUCACUCUGGCAAAAGGACUGCUCUAACUGCUAAAGUGAAGUUACUUUUUGAAACAGGUAAAGCGGUACCGCA ..................((..(((.....))).......((.((((((.((.(((.(((((((...(((...(((.....)))..)))..)))))))...)))))))))))))...)). ( -24.80) >DroSec_CAF1 5379 102 + 1 ACUGCCACACACACACACGCACAGAUAUUU------------------UCACUCUGGCAAAAGGACUGCUCUAACUGCUAAAGUGAAGUUACUUUUUGAAACAGGUAAAGCGGUAACGCA ..((((.......................(------------------(((((.(((((...(((....)))...))))).))))))(((.(.....).))).))))..(((....))). ( -22.10) >DroSim_CAF1 5479 95 + 1 ACUGCCACACACAC------ACAGAUAUUU------------------UCACUCUGGCAU-AGGACUGCUCUAACUGCUAAAGUGAAGUUACUUUUUGAAACAGGUAAAGCGGUAACGCA ..((((........------.........(------------------(((((.((((((-(((.....))))..))))).))))))(((.(.....).))).))))..(((....))). ( -22.40) >consensus ACUGCCACACACACACACGCACAGAUAUUU__________________UCACUCUGGCAAAAGGACUGCUCUAACUGCUAAAGUGAAGUUACUUUUUGAAACAGGUAAAGCGGUAACGCA ..((((..........................................(((((.(((((...(((....)))...))))).))))).(((.(.....).))).))))..(((....))). (-21.23 = -21.23 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:49 2006