Locus 4118

Sequence ID X_DroMel_CAF1
Location 10,849,668 – 10,849,788
Length 120
Max. P 0.682427
window6766

overview

Window 6

Location 10,849,668 – 10,849,788
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.25
Mean single sequence MFE -42.03
Consensus MFE -31.88
Energy contribution -34.00
Covariance contribution 2.12
Combinations/Pair 1.13
Mean z-score -1.64
Structure conservation index 0.76
SVM decision value 0.31
SVM RNA-class probability 0.682427
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10849668 120 - 22224390
UGCGGCUUACUUGGGCAUUAGCUGGUCAUUCGGUCAUUUGUCGGCUGCCCAAGGAGUUCAAGUGGAUUUCUAGCAAGGCGACGAGCAGCUUUGUGGUUCCAUCGGCACAGAAAUUCCGCA
.((((....((((((((...(((((.((..........)))))))))))))))..((.(..(((((...(((.((((((........))))))))).)))))..).)).......)))). ( -42.60)
>DroSec_CAF1 3695 120 - 1
UGCGGCUUACUUGGGCAUUAGCUGGUCAUUCGGUCAUUUGUCGGCUGCCCAAGAAGUUCAAGUGGAUUUCUGACAAGGCGUCGGGCAGCUUUGUGGUACCAUCGGCACAGGAAUUCCGCA
.((((..(.((((((((...(((((....)))))....))))((((((((.((((((((....))))))))(((.....))))))))))).(((.(......).))))))).)..)))). ( -45.90)
>DroSim_CAF1 3774 120 - 1
UGCGGCUUACUUGGGCAUUAGCUGGUCAUUUGGUCAUUUGUCGGCUGCCCAAGGAGUUCAAGUGGAUUUCUGACAAGGCGCCGGGCAGCUUUGUGGUACCAUCGGCACAGAAAUUCUGCA
.(((((((.((((((((...(((((.((..(....)..)))))))))))))))))))).....((((((((((((((((........)))))))(....).......))))))))).)). ( -41.90)
>DroYak_CAF1 3733 101 - 1
UGCGGCUUACUUGGGCAUUAGCUGGUCAUUUGGUCAUUUGUCGGCUGCCCAAGGAGUUCAAGUG-------------------GGCAGCCUUGUGGUUCCAUUGGUCCAGAAAUUGCGCA
.(((((((....)))).....((((.(...(((((((.....(((((((((..(....)...))-------------------)))))))..))))..)))...).))))......))). ( -37.70)
>consensus
UGCGGCUUACUUGGGCAUUAGCUGGUCAUUCGGUCAUUUGUCGGCUGCCCAAGGAGUUCAAGUGGAUUUCUGACAAGGCG_CGGGCAGCUUUGUGGUACCAUCGGCACAGAAAUUCCGCA
.(((((((.((((((((...(((((.((..........)))))))))))))))))))......(((((((((.....((.....)).(((..(((....))).))).)))))))))))). (-31.88 = -34.00 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:46 2006