Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,848,668 – 10,848,788 |
Length | 120 |
Max. P | 0.814364 |
Location | 10,848,668 – 10,848,788 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -46.70 |
Consensus MFE | -31.79 |
Energy contribution | -30.72 |
Covariance contribution | -1.06 |
Combinations/Pair | 1.33 |
Mean z-score | -1.98 |
Structure conservation index | 0.68 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814364 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10848668 120 + 22224390 UGUGUGGGCGAUGUGGCCAUCGUGUCUGGGUUAGACCGCAAAUGCAGACGGUUCGCCGGAGCGCGGAACAAGUUGUAAUUGUUGUUGGGAACGAACUAGGAUGGCAAACCCUGACCCACC ...(((((((..((.((((((..(((((.(((........))).)))))(((((((((.....)))(((((.......)))))........))))))..))))))..))..)).))))). ( -40.10) >DroSec_CAF1 2669 120 + 1 UGUGUGGGCGAUGUGGCCAUCGUGUCUGGGUUAGACCGCAAAUGCAGACGGUUCGCCGGAGCGCGGAACAAGUAGUAAUUGUAGUUGGGAACAAACUAGGAUAGCAAGCCCUGACCCAUC ...((((((((((....))))))(((.(((((...((((....((...(((....)))..))))))........((.(((.((((((....).))))).))).)).))))).))))))). ( -40.90) >DroSim_CAF1 2748 120 + 1 UGUGUGGGCGAUGUGGCCAUCGUGUCUGGGUUAGACCGCAAAUGCAGACGGUUCGCCGGAGCGCGGAACAAGUUGUAAUUGUAGUUGGGAACGAACUAGGAUGGCAAGCCCUGACCCAUC ...((((((((((....))))))(((.(((((...((((....((...(((....)))..)))))).......(((.(((.((((((....).))))).))).)))))))).))))))). ( -41.60) >DroYak_CAF1 2751 120 + 1 UGGGGGGGGGGGGGGGGCCUUGGGUUUGGGGUUGGCCCCAAAAGCAGAAGGUUUGCCGACGGGGGGGACAAGUUGUAAUUGUUGUUGGAAAAGAAAUUGGGGGGCAAACCCCCCCCCCCC .((((((((((((...((((((..(((((((....)))))))..)..((..(((.(((((((.((..((.....))..)).)))))))...)))..))..)))))...)))))))))))) ( -64.20) >consensus UGUGUGGGCGAUGUGGCCAUCGUGUCUGGGUUAGACCGCAAAUGCAGACGGUUCGCCGGAGCGCGGAACAAGUUGUAAUUGUAGUUGGGAACGAACUAGGAUGGCAAACCCUGACCCACC ...(((((((.....((((((.(((.((..((..((..(((.(((((...((((((......)).))))...))))).)))..))..))..)).)).).))))))......)).))))). (-31.79 = -30.72 + -1.06)
Location | 10,848,668 – 10,848,788 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -36.31 |
Consensus MFE | -25.41 |
Energy contribution | -24.73 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.25 |
Mean z-score | -1.83 |
Structure conservation index | 0.70 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10848668 120 - 22224390 GGUGGGUCAGGGUUUGCCAUCCUAGUUCGUUCCCAACAACAAUUACAACUUGUUCCGCGCUCCGGCGAACCGUCUGCAUUUGCGGUCUAACCCAGACACGAUGGCCACAUCGCCCACACA .((((((...((((((((......(((.......)))(((((.......))))).........))))))))((((((....))((......))))))..((((....))))))))))... ( -35.70) >DroSec_CAF1 2669 120 - 1 GAUGGGUCAGGGCUUGCUAUCCUAGUUUGUUCCCAACUACAAUUACUACUUGUUCCGCGCUCCGGCGAACCGUCUGCAUUUGCGGUCUAACCCAGACACGAUGGCCACAUCGCCCACACA ..((((((.(((..........((((((((........))))..)))).(((..((((((..(((....)))...))....))))..)))))).))).(((((....))))).))).... ( -28.50) >DroSim_CAF1 2748 120 - 1 GAUGGGUCAGGGCUUGCCAUCCUAGUUCGUUCCCAACUACAAUUACAACUUGUUCCGCGCUCCGGCGAACCGUCUGCAUUUGCGGUCUAACCCAGACACGAUGGCCACAUCGCCCACACA ..(((((...(....((((((...(((((((.......((((.......))))..........))))))).((((((....))((......))))))..))))))..)...))))).... ( -29.83) >DroYak_CAF1 2751 120 - 1 GGGGGGGGGGGGUUUGCCCCCCAAUUUCUUUUCCAACAACAAUUACAACUUGUCCCCCCCGUCGGCAAACCUUCUGCUUUUGGGGCCAACCCCAAACCCAAGGCCCCCCCCCCCCCCCCA ((((((((((((...(((...............................(((((.........)))))......((..(((((((....)))))))..)).)))...)))))))))))). ( -51.20) >consensus GAUGGGUCAGGGCUUGCCAUCCUAGUUCGUUCCCAACAACAAUUACAACUUGUUCCGCGCUCCGGCGAACCGUCUGCAUUUGCGGUCUAACCCAGACACGAUGGCCACAUCGCCCACACA (((((((((.((((((((......(((.......))).((((.......))))..........))))))))...((..((((.((.....))))))..)).))))).))))......... (-25.41 = -24.73 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:45 2006