Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,848,520 – 10,848,636 |
Length | 116 |
Max. P | 0.800214 |
Location | 10,848,520 – 10,848,636 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.00 |
Mean single sequence MFE | -40.45 |
Consensus MFE | -23.60 |
Energy contribution | -23.35 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.16 |
Mean z-score | -2.22 |
Structure conservation index | 0.58 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.800214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10848520 116 - 22224390 AGCAACGAAAGGGGUC----GUGAUGUGGGCGUGGCUCGCGCAUGCUGGCUUUUAAUUAAAAUUAAGCAACGCCAACGGCGGCCGCUAAAAACAUGCAAGUGCAAUGCAUUUGCUUAUCA (((..(....).((((----((..(((.(((((((((.((....)).))))((((((....))))))..))))).))))))))))))........((((((((...))))))))...... ( -38.60) >DroSec_CAF1 2534 108 - 1 --------AAGGGGUC----GGCAUGGGGGCGUGGCUCGCGCAUGCUGGCUUUUAAUUAAAAUUAAGCAACGCCAACGGCGGCCGCUAAAAACAUGCAAGUGCAAUGCAUUUGUUUAUCA --------.(((((((----(((((((((((...)))).).)))))))))))))...........(((..((((...))))...)))........((((((((...))))))))...... ( -36.00) >DroSim_CAF1 2613 108 - 1 --------AAGGGGUC----GGCAUGGGGGCGUGGCUCGCGCAUGCUGGCUUUUAAUUAAAAUUAAGCAACGCCAACGGCGGCCGCUAAAAACAUGCAAGUGCAAUGCAUUUGUUUAUCA --------.(((((((----(((((((((((...)))).).)))))))))))))...........(((..((((...))))...)))........((((((((...))))))))...... ( -36.00) >DroYak_CAF1 2598 120 - 1 CCCAACAAAAGGGGUGCGGGGGAAAGGGGGGGGGGCCCCCCCAUGCGGGCUUUUAAUUAAAAUUAACCACCCCCCCCGGGGGCACCAAAAAACGGGCAAGCCCAAGGCUUUUGUUUACCA ...((((((((.((((((((((...(((((((...)))))))....(((...(((((....)))))...))))))))....))))).......(((....)))....))))))))..... ( -51.20) >consensus ________AAGGGGUC____GGCAUGGGGGCGUGGCUCGCGCAUGCUGGCUUUUAAUUAAAAUUAAGCAACGCCAACGGCGGCCGCUAAAAACAUGCAAGUGCAAUGCAUUUGUUUAUCA ............(((................(((((.(((...((.((((.((((((....))))))....)))).)))))))))).........((((((((...))))))))..))). (-23.60 = -23.35 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:43 2006