Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,847,851 – 10,847,970 |
Length | 119 |
Max. P | 0.661987 |
Location | 10,847,851 – 10,847,970 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.53 |
Mean single sequence MFE | -24.65 |
Consensus MFE | -17.55 |
Energy contribution | -18.55 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.71 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661987 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10847851 119 - 22224390 ACACUAGCUAGCAUCUAGCAUAUAGCGACAACAAAGUGCUUUUAUCAUUUUGCGGAUCCCGCAUUAAUUUGAUUAGUAUUUAAUAUCGCAUUAUAAA-GUGAUACAAAUUUUGGGCCGCA ......(((((...))))).....(((.(((..(((((((...((((...(((((...)))))......)))).)))))))..((((((........-))))))......)))...))). ( -28.20) >DroSec_CAF1 1887 108 - 1 ACACUA----GCAUCUA-------GCGACAACAAAGAGCUUUUAUCAUUUUGCGGAUUCCGCAUUGAUUUGAUUAGUAUUUAAUAUCGCAUUAUAAA-GUGAUACAAAUUUUGGGCCGCA ......----.......-------(((....(((((.(((...((((...(((((...)))))......)))).)))......((((((........-))))))....)))))...))). ( -21.10) >DroSim_CAF1 1948 115 - 1 ACACUA----GCAUCUAGCAUAUAGCGACAACAAAGUGCUUUUAUCAUUUUGCGGAUCCCGCAUUGAUUUGAUUAGUAUUUAAUAUCGCAUUAUAAA-GUGAUACAAAUUUUGGGCCGCA ......----((.....)).....(((.(((..(((((((...((((...(((((...)))))......)))).)))))))..((((((........-))))))......)))...))). ( -24.30) >DroYak_CAF1 1984 99 - 1 ACACUG----CCAU----------------ACAAAGUGCUUUUAUCAUUUUGCGGAUCCCGCAUUGAUUUGAUUAGUAUUUAAUAUCGCAUUAAAAAUGUGAUACAAAUU-CGGGCCGCA .....(----((..----------------...(((((((...((((...(((((...)))))......)))).)))))))..((((((((.....))))))))......-..))).... ( -25.00) >consensus ACACUA____GCAUCUA_______GCGACAACAAAGUGCUUUUAUCAUUUUGCGGAUCCCGCAUUGAUUUGAUUAGUAUUUAAUAUCGCAUUAUAAA_GUGAUACAAAUUUUGGGCCGCA ........................(((......(((((((...((((...(((((...)))))......)))).)))))))..((((((.........))))))............))). (-17.55 = -18.55 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:42 2006