Locus 4114

Sequence ID X_DroMel_CAF1
Location 10,847,520 – 10,847,613
Length 93
Max. P 0.900806
window6760 window6761

overview

Window 0

Location 10,847,520 – 10,847,613
Length 93
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 94.62
Mean single sequence MFE -27.31
Consensus MFE -25.28
Energy contribution -25.66
Covariance contribution 0.38
Combinations/Pair 1.08
Mean z-score -1.68
Structure conservation index 0.93
SVM decision value 0.63
SVM RNA-class probability 0.805801
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10847520 93 + 22224390
GCACUGAGUGUAGUCCCAGGUGAGUCAUGUUGCUAAUUAGUUACGGAUAUGUGCGACAUGCUCACACGAAUACGAAUACACUGAAGCAAGGAU
((..(.((((((.((...((((((.((((((((...................))))))))))))).)......)).)))))).).))...... ( -26.61)
>DroSec_CAF1 1556 93 + 1
GUAGUGAGUGUAGUCCCAGGUGAGUCAUGUUGCUAAUUAGUUACGGAUAUGUGCGACAUGCUCACAUGGAUACGAAUACACUGGAGCAAGGAU
((..(.((((((.(((((.(((((.((((((((...................))))))))))))).)))....)).)))))).).))...... ( -29.61)
>DroSim_CAF1 1617 93 + 1
GUAGUGAGUGUAGUCCCAGGUGAGUCAUGUUGCUAAUUAGUUACGGAUAUGUGCGACAUGCUCACACGGAUACGAAUACACUGGAGCAAGGAU
((..(.((((((((((...(((((.((((((((...................)))))))))))))..)))).....)))))).).))...... ( -29.11)
>DroYak_CAF1 1644 92 + 1
-UAGUGACUGUAGUCCCAGGUGAGUCAUGUUGCUAAUUAGUUACGGAUAUGUGCGACAAGCUCACACGGAUGCGAACACACUGGAGCAAGGAU
-(((((..(((.((((...((((((..((((((...................)))))).))))))..))))....)))))))).......... ( -23.91)
>consensus
GUAGUGAGUGUAGUCCCAGGUGAGUCAUGUUGCUAAUUAGUUACGGAUAUGUGCGACAUGCUCACACGGAUACGAAUACACUGGAGCAAGGAU
.(((((..((((.(((...(((((.((((((((...................)))))))))))))..)))))))....))))).......... (-25.28 = -25.66 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 10,847,520 – 10,847,613
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 94.62
Mean single sequence MFE -22.31
Consensus MFE -20.72
Energy contribution -20.66
Covariance contribution -0.06
Combinations/Pair 1.13
Mean z-score -1.86
Structure conservation index 0.93
SVM decision value 1.02
SVM RNA-class probability 0.900806
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10847520 93 - 22224390
AUCCUUGCUUCAGUGUAUUCGUAUUCGUGUGAGCAUGUCGCACAUAUCCGUAACUAAUUAGCAACAUGACUCACCUGGGACUACACUCAGUGC
......(((..((((((.((.((...(.((((((((((.((...................)).))))).)))))))).)).)))))).))).. ( -22.51)
>DroSec_CAF1 1556 93 - 1
AUCCUUGCUCCAGUGUAUUCGUAUCCAUGUGAGCAUGUCGCACAUAUCCGUAACUAAUUAGCAACAUGACUCACCUGGGACUACACUCACUAC
...........((((((...((.((((.((((((((((.((...................)).))))).))))).))))))))))))...... ( -24.11)
>DroSim_CAF1 1617 93 - 1
AUCCUUGCUCCAGUGUAUUCGUAUCCGUGUGAGCAUGUCGCACAUAUCCGUAACUAAUUAGCAACAUGACUCACCUGGGACUACACUCACUAC
...........((((((...((.((((.((((((((((.((...................)).))))).))))).))))))))))))...... ( -23.41)
>DroYak_CAF1 1644 92 - 1
AUCCUUGCUCCAGUGUGUUCGCAUCCGUGUGAGCUUGUCGCACAUAUCCGUAACUAAUUAGCAACAUGACUCACCUGGGACUACAGUCACUA-
.........((((.(((....(((..((((((.....))))))......((..((....))..)))))...)))))))(((....)))....- ( -19.20)
>consensus
AUCCUUGCUCCAGUGUAUUCGUAUCCGUGUGAGCAUGUCGCACAUAUCCGUAACUAAUUAGCAACAUGACUCACCUGGGACUACACUCACUAC
...........((((((.((....(((.((((((((((.((...................)).))))).))))).))))).))))))...... (-20.72 = -20.66 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:41 2006