Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,189,886 – 1,190,000 |
Length | 114 |
Max. P | 0.500000 |
Location | 1,189,886 – 1,190,000 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.33 |
Mean single sequence MFE | -50.75 |
Consensus MFE | -34.20 |
Energy contribution | -34.58 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.22 |
Mean z-score | -1.48 |
Structure conservation index | 0.67 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1189886 114 + 22224390 UUGUGGCCUGCGGCAUGGGUCUGAACUGCUG------CUGGAGAGGAUUCGCCUGGCCAUGCAGUAAGCUGUAGGCUGGCUUGUAGGUCGUGGCUGCCACCGCAGGAUUGCCUCCAGGCA ....((((((((((...(((....)))((((------((((..(((.....)))..))).)))))..)))))))))).(((((.((((.((..((((....)))).)).)))).))))). ( -50.00) >DroSec_CAF1 25917 114 + 1 UUGUGGCCUGCGGCAUGGGUCUGAACUGCUG------GUGGAGAGGAUUCGCCUGGCUAUGGAGCAAGCUGUAGGCUGGCUUGUAGGUGGUGGCUGCCACCGCAGGAUUGCCUCCAGGCA ....((((((((((...(.((((....((((------(((((.....)))))).)))..)))).)..)))))))))).(((((.(((..((..((((....)))).))..))).))))). ( -50.70) >DroEre_CAF1 25158 114 + 1 UUGUGGCCUGCGGCAUGGGCCUGAACUGCUG------CUGGAGAGGAUUCGUCUGGCCAUGGAGCAAGCCGUAGGCUGGCUUGUAAGUGGUGGCUGCCACCGCCGGAUUUCCCCCAGGCA .....((((((((((.(........))))))------).((.(.(((...(((((((......((((((((.....))))))))....(((((...)))))))))))).)))))))))). ( -49.70) >DroAna_CAF1 10404 120 + 1 UGGUGGCCGCUGGCAUGGGCCUGAACUGCUGCUGUUGCUGGAGAAGAUUUCCCUGGCCAUAGGGCAGUCCAUAGGGUGGCUUGUAAGUGGUGGCUGCCACGGCGGGAUUACCCCCGGGAA (((..(((((((..(..((((...((((((.((((.((..(.((.....)).)..)).))))))))))((....)).))))..)...)))))))..)))(((.(((....)))))).... ( -52.60) >consensus UUGUGGCCUGCGGCAUGGGCCUGAACUGCUG______CUGGAGAGGAUUCGCCUGGCCAUGGAGCAAGCCGUAGGCUGGCUUGUAAGUGGUGGCUGCCACCGCAGGAUUGCCCCCAGGCA ....((((((((((.(((((.......)))........(((..(((.....)))..))).....)).)))))))))).(((((...(((((((...)))))))(((....))).))))). (-34.20 = -34.58 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:59 2006