Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,843,064 – 10,843,184 |
Length | 120 |
Max. P | 0.770819 |
Location | 10,843,064 – 10,843,184 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -23.08 |
Consensus MFE | -17.24 |
Energy contribution | -17.30 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.78 |
Structure conservation index | 0.75 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10843064 120 + 22224390 UUUUCUUUGGCGUUUUUGCCACCGAUUGUAAUGACUGCAAACAUUUCAAUUUUAAUUCAAGUUUUAAUUGCUUGUAAAAAUGCGUUAUUGUAUUUUUUGUUGUGUUUUUAUUCAUUAUUU ...((..(((((....)))))..))..(((((((.((.((((((..((.........(((((.......))))).(((((((((....)))))))))))..)))))).)).))))))).. ( -26.50) >DroSec_CAF1 21849 119 + 1 UUUUCUUUGGCGUUUUUGCCACCGAUUGUAAUGACUGCAAACAUUUCAAUUUUAAUUUAAGUUUUAAUUGCUUGUAAAAUUGCGUUAUUGUAUUU-UUGUUGGGUUUUUAUUCAUUAUUU ...((..(((((....)))))..))..(((((((.((.((((....(((((..(((....)))..)))))((..(((((.((((....)))).))-)))..)))))).)).))))))).. ( -21.20) >DroSim_CAF1 2735 119 + 1 UUUUCUUUGGCGUUUUUGCCACCGAUUGUAAUGACUGCAAACAUUUCAAUUUUAAUUCAAGUUUUAAUUGCUUGUAAAAUUGCGUUAUUGUAUUU-UUGUUGUGUUUUUAUUCAUUAUUU ...((..(((((....)))))..))..(((((((.((.((((((..(((........(((((.......)))))......((((....))))...-)))..)))))).)).))))))).. ( -23.00) >DroYak_CAF1 10897 114 + 1 UUUCCUUUGGCAUUUUUGCCACCGAUUGUAAUGACUGCAAACAUUUCAAUUUGAAUUCAAGUUUUAAUUGCUUGUAAAAUUGCGUUAUUGUAUUU-UC-----GUUUUUACACUCUAUUU .......(((((....)))))..((.(((((.((((((((.((....((((((....)))))).....)).)))))(((.((((....)))).))-).-----))).))))).))..... ( -21.60) >consensus UUUUCUUUGGCGUUUUUGCCACCGAUUGUAAUGACUGCAAACAUUUCAAUUUUAAUUCAAGUUUUAAUUGCUUGUAAAAUUGCGUUAUUGUAUUU_UUGUUGUGUUUUUAUUCAUUAUUU .......(((((....))))).......(((((((.(((((((...(((((..(((....)))..)))))..)))....))))))))))).............................. (-17.24 = -17.30 + 0.06)
Location | 10,843,064 – 10,843,184 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -17.25 |
Consensus MFE | -13.12 |
Energy contribution | -14.00 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -2.55 |
Structure conservation index | 0.76 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10843064 120 - 22224390 AAAUAAUGAAUAAAAACACAACAAAAAAUACAAUAACGCAUUUUUACAAGCAAUUAAAACUUGAAUUAAAAUUGAAAUGUUUGCAGUCAUUACAAUCGGUGGCAAAAACGCCAAAGAAAA ...((((((....(((((.....((((((.(......).)))))).((((.........))))..............)))))....))))))...((..((((......))))..))... ( -18.10) >DroSec_CAF1 21849 119 - 1 AAAUAAUGAAUAAAAACCCAACAA-AAAUACAAUAACGCAAUUUUACAAGCAAUUAAAACUUAAAUUAAAAUUGAAAUGUUUGCAGUCAUUACAAUCGGUGGCAAAAACGCCAAAGAAAA ...((((((....((((.......-.............((((((((.(((.........)))....))))))))....))))....))))))...((..((((......))))..))... ( -14.45) >DroSim_CAF1 2735 119 - 1 AAAUAAUGAAUAAAAACACAACAA-AAAUACAAUAACGCAAUUUUACAAGCAAUUAAAACUUGAAUUAAAAUUGAAAUGUUUGCAGUCAUUACAAUCGGUGGCAAAAACGCCAAAGAAAA ...((((((....(((((......-.............((((((((((((.........))))...))))))))...)))))....))))))...((..((((......))))..))... ( -19.05) >DroYak_CAF1 10897 114 - 1 AAAUAGAGUGUAAAAAC-----GA-AAAUACAAUAACGCAAUUUUACAAGCAAUUAAAACUUGAAUUCAAAUUGAAAUGUUUGCAGUCAUUACAAUCGGUGGCAAAAAUGCCAAAGGAAA .....((.((((((...-----..-.....................((((.........))))..(((.....)))...)))))).)).......((..(((((....)))))..))... ( -17.40) >consensus AAAUAAUGAAUAAAAACACAACAA_AAAUACAAUAACGCAAUUUUACAAGCAAUUAAAACUUGAAUUAAAAUUGAAAUGUUUGCAGUCAUUACAAUCGGUGGCAAAAACGCCAAAGAAAA ...((((((....((((.............(......)((((((((((((.........))))...))))))))....))))....))))))...((..((((......))))..))... (-13.12 = -14.00 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:36 2006