Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,841,490 – 10,841,603 |
Length | 113 |
Max. P | 0.895081 |
Location | 10,841,490 – 10,841,603 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 95.52 |
Mean single sequence MFE | -38.73 |
Consensus MFE | -32.98 |
Energy contribution | -34.98 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.98 |
Structure conservation index | 0.85 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.895081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10841490 113 + 22224390 UGGAGCUGAAAGUUGUUUGAGCAGUUCAUGUGGAUGUGGGUGGAUUGGGUGUGUGGUCUAGCCAGGACUUCAGGACUGGCUUGCAACUCAUUCAUAUUCAUUUGCUGUAAACA ..((((((..((....))...)))))).(((..(((..(((((((((((((.((.((..((((((..(....)..)))))).)).)).)))))).)))))))..).))..))) ( -38.40) >DroSec_CAF1 20290 109 + 1 UGGAGCUGAAAGUUGAGUGAGCAGU---UGUGGAUGUGGGUGGAU-GGGUGUGUGGUCUAGCCAGGACUUCGGGACUGGCUUGCAACUCAUUCAUAUUCAUUUGCUGUAAACA ................((..(((((---.(((((((((....(((-((((.....((..((((((..(....)..)))))).)).))))))))))))))))..)))))..)). ( -39.00) >DroSim_CAF1 1152 109 + 1 UGGAGCUGAAAGUUGGGUGAGCAGU---UGUGGAUGUGGGUGGAU-GGGUGUGUGGUCUAGCCAGGACUUCGGGACUGGCUUGCAACUCAUUCAUAUUCAUUUGCUGUAAACA ................((..(((((---.(((((((((....(((-((((.....((..((((((..(....)..)))))).)).))))))))))))))))..)))))..)). ( -38.80) >consensus UGGAGCUGAAAGUUGAGUGAGCAGU___UGUGGAUGUGGGUGGAU_GGGUGUGUGGUCUAGCCAGGACUUCGGGACUGGCUUGCAACUCAUUCAUAUUCAUUUGCUGUAAACA ....................(((((....((((((((((((((.......((...((..((((((..(....)..)))))).)).))))))))))))))))..)))))..... (-32.98 = -34.98 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:29 2006