Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,831,603 – 10,831,722 |
Length | 119 |
Max. P | 0.707127 |
Location | 10,831,603 – 10,831,722 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 79.55 |
Mean single sequence MFE | -36.10 |
Consensus MFE | -29.67 |
Energy contribution | -31.07 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.15 |
Mean z-score | -1.33 |
Structure conservation index | 0.82 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10831603 119 - 22224390 GGCAUCGGCGACAUCGCAGUGACAAGUACUCAAGUCGGGUGCAGCUGCUGCGACUCGAGGAUAUUUGUGUCCUUGCUGUUGAAUUCUGAAUUCUCGUUUAAAUUCGACAUAUUGCUUUA ((((..(((((..(((((((..(..((((((.....)))))).)..))))))).))(((((((....))))))))))((((((((.(((((....)))))))))))))....))))... ( -39.20) >DroSim_CAF1 37674 119 - 1 GGCAUCGGCGACAUCGCAGUGACAAGUACUCAAGUUGGGUGCAGCUGCUGCGACUCGAGGAUAUUUGUGUCCUUGCCGUAGAAUUCUGAAUUCUCGUUUAAAUUCGGCACUUUGCUUUA ((((....(((..(((((((..(..((((((.....)))))).)..))))))).)))((((((....))))))))))(((((...(((((((........)))))))...))))).... ( -39.10) >DroEre_CAF1 54728 98 - 1 GGCAUCGGCGACAUCGCAGUGACAAGUGCUCAAGUCGGUUGCAGCUGCUGCGAUUCGGGGAUAUUUGUGUCC-UGCCGUGGAGUUU--------------------GCACUUUAAUUUG (((.....(((.(((((((((((..........)))(((....))))))))))))))((((((....)))))-)))).((((((..--------------------..))))))..... ( -30.00) >consensus GGCAUCGGCGACAUCGCAGUGACAAGUACUCAAGUCGGGUGCAGCUGCUGCGACUCGAGGAUAUUUGUGUCCUUGCCGUAGAAUUCUGAAUUCUCGUUUAAAUUCGGCACUUUGCUUUA ((((....(((..(((((((..(..((((((.....)))))).)..))))))).))).(((((....))))).))))(((((((.(((((((........))))))).))))))).... (-29.67 = -31.07 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:24 2006