Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,831,149 – 10,831,257 |
Length | 108 |
Max. P | 0.862233 |
Location | 10,831,149 – 10,831,257 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 91.36 |
Mean single sequence MFE | -41.30 |
Consensus MFE | -34.60 |
Energy contribution | -34.80 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.03 |
Mean z-score | -2.60 |
Structure conservation index | 0.84 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10831149 108 - 22224390 CGGUCAGCAUGGCAGGCAAAUUUGCCAGCCUGGGCAGCCAAAUGCCAGCCAAGUGCCAAGUGGCAGGACGAACAGGACGAACAGGACGAAGGCAUUACGCGCUGAACU ...(((((.((((.((((....)))).((....)).))))((((((.(((...((((....))))(..(.....)..).....)).)...))))))....)))))... ( -39.10) >DroSim_CAF1 37255 108 - 1 CGGUCAGCGUGGCAGGCAAAUUUGCCAGCCUGGGCAGCCAAAUGCCAGCCAAGUGCCAAGUGGCAGGACGAACAGGACAAACAGGACGAAGGCAUUACGCGCUGAACU ...((((((((((.((((....)))).((....)).))).((((((.(((...((((....))))(..(.....)..).....)).)...))))))..)))))))... ( -41.50) >DroEre_CAF1 54284 99 - 1 CGGUCAGCGUGGCAGGCAAAUUUGCCAGGCCGGGCGGCCAAAUGCCAGCCAAGUGCCAAGUGGCAGGA---------CAAACAGGACGAAGGCAUUACGCGCUGAACU ...(((((((((((((((....)))).((((....))))...)))).(((...((((....))))(..---------(.....)..)...))).....)))))))... ( -43.30) >consensus CGGUCAGCGUGGCAGGCAAAUUUGCCAGCCUGGGCAGCCAAAUGCCAGCCAAGUGCCAAGUGGCAGGACGAACAGGACAAACAGGACGAAGGCAUUACGCGCUGAACU ...((((((((...(((.....((((......))))))).((((((.(((...((((....))))(..(.....)..).....)).)...)))))).))))))))... (-34.60 = -34.80 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:23 2006