Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,827,830 – 10,827,937 |
Length | 107 |
Max. P | 0.949863 |
Location | 10,827,830 – 10,827,937 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 84.22 |
Mean single sequence MFE | -26.25 |
Consensus MFE | -19.62 |
Energy contribution | -19.50 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -2.34 |
Structure conservation index | 0.75 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.949863 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10827830 107 - 22224390 AGCAGGAGCAGAAGCAGAAGCUGCUUUCUCUGCAGGAGAAAGGGCGUAGAAAGUUGGGCGAUGAGCGGUGGGUGGGAAAACUGGCAGUGGCAAAAAAUGUCAUAUAG .((....((((((((((...)))))...)))))..........((.(((....))).)).....)).((.(((......))).)).((((((.....)))))).... ( -26.40) >DroSec_CAF1 42946 96 - 1 AGCAGGAGCAGAAGCAGAAGCUGCUUUCUCUGCAGGAGAAAGGGCGUAGAAAGUUGGGCG-----------GUGGGAAAACUGGCACUGGCAAAAAAUGUCAUAUAG .((((.((..(((((((...))))))))))))).........(((((.....((..((((-----------((......))).)).)..)).....)))))...... ( -25.20) >DroEre_CAF1 51296 86 - 1 AGCAGGAGCGAAAG-AGAAGCCGCUUUCUCUGCAGGAGAAAGGGCGCAGAAAGUUGGGC--------------------GCUGGCAGUGGCAAAAAAUGUCAUAUAG .((....)).....-....(((.(((((((.....)))))))(((((..........))--------------------)))))).((((((.....)))))).... ( -27.00) >DroYak_CAF1 47104 89 - 1 AGCAGGAGCAGAAGAAGAAGCUGCUUUCUCUGCAGGAGAAAGGGCGUAGAAAGUUGCGCU-----------G-------ACUGGCAGUGGCAAAAAAUGUCAUAUAG .((.((.(((((..(((......)))..))))).........(((((((....)))))))-----------.-------.)).)).((((((.....)))))).... ( -26.40) >consensus AGCAGGAGCAGAAGCAGAAGCUGCUUUCUCUGCAGGAGAAAGGGCGUAGAAAGUUGGGCG___________G_______ACUGGCAGUGGCAAAAAAUGUCAUAUAG .((....))..........(((.(((((((.....))))))).((.(((....))).)).......................))).((((((.....)))))).... (-19.62 = -19.50 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:20 2006