Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 186,096 – 186,192 |
Length | 96 |
Max. P | 0.598330 |
Location | 186,096 – 186,192 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 76.81 |
Mean single sequence MFE | -24.47 |
Consensus MFE | -13.44 |
Energy contribution | -14.64 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.23 |
Mean z-score | -1.65 |
Structure conservation index | 0.55 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598330 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 186096 96 - 22224390 CAGCAAGCAGACAAAGGUGUAGCUCACAACAUUGCAUAAGCGUAGAGAAUCGCAUGAAUGCGCUUCUUAGCUUUUGCAGUAUAAGAAUACAUAUGU------------- ..........(((...(((((..((.....((((((.((((...(((((.((((....)))).))))).)))).))))))....)).))))).)))------------- ( -25.30) >DroSec_CAF1 16276 96 - 1 CAGCAAGCAGACAAAGGUGUAGCUCAAAACAUUGCAUAAGCGUAGAGAAUCGCAUGAAUGCGCUUCUUAGCUUUUGCAGUACAAGAAUACAUAUGU------------- ..........(((...(((((..((.....((((((.((((...(((((.((((....)))).))))).)))).))))))....)).))))).)))------------- ( -25.30) >DroSim_CAF1 15053 96 - 1 CAGCAAGCAGACAAAGGUGUAGCUCAAAACAUUGCAUAAGCGUAGAGAAUCGCAUGAAUGCGCUUCUUAGCUUUUGCAGUACAAGAAUACAUAUGU------------- ..........(((...(((((..((.....((((((.((((...(((((.((((....)))).))))).)))).))))))....)).))))).)))------------- ( -25.30) >DroEre_CAF1 18048 96 - 1 CAGCAACUACUCAAAGGUGUAGCUCAAAGCAUUGCACAAGCGACGGGAACUGCAUGAAUGCGCUUCUCAGUCUGUGCAGUACAAGAAUACAUAUGU------------- ................(((((((.....))((((((((..(...(((((.((((....)))).))))).)..)))))))).......)))))....------------- ( -25.80) >DroYak_CAF1 15509 96 - 1 CAGCAACUACUCGAAGGUGUAGCUCAAACCAUUGCACAAGCGGCGAGAACUGCAUGAAUGCGCUUCUCAGUCUCUGCAGUACAAGAAUACAUAUGU------------- ..(((.((((.(....).))))........((((((...(.((((((((.((((....)))).))))).))).))))))).............)))------------- ( -22.40) >DroPer_CAF1 14931 103 - 1 CAGCACCCACUCGAAGGCGCAGCACAAUGCAUUGCACAAGCAAUCAGAAGUACAUGAAUACUCGU--AGGUCUGAGCAU----AGAAUGGAGAUACCACUCGUACAAAC ..((.((........)).)).((...((((.((((....))))(((((..(((..........))--)..)))))))))----.((.(((.....))).))))...... ( -22.70) >consensus CAGCAACCACACAAAGGUGUAGCUCAAAACAUUGCACAAGCGUAGAGAAUCGCAUGAAUGCGCUUCUUAGCCUUUGCAGUACAAGAAUACAUAUGU_____________ ................(((((.........((((((...((...(((((.((((....)))).))))).))...)))))).......)))))................. (-13.44 = -14.64 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:06 2006