Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,805,871 – 10,805,961 |
Length | 90 |
Max. P | 0.583001 |
Location | 10,805,871 – 10,805,961 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 82.25 |
Mean single sequence MFE | -40.15 |
Consensus MFE | -30.85 |
Energy contribution | -31.52 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.17 |
Mean z-score | -1.39 |
Structure conservation index | 0.77 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10805871 90 + 22224390 CAUUGAAUGUGCCGCUGGAGCGCCUGGAAUCCCGCCAGGCGCACGCCCAGCGCAACGAGCACGGCG---UGGAUGGCGG---AUCACGACAGAAUG .......(((((((((...((((((((.......))))))))(((((..((.......))..))))---)....)))))---..))))........ ( -37.20) >DroVir_CAF1 19734 87 + 1 CGCUGAACGUGCCGCUGGAGCGUCUGGAGUCGCGCCAGGCGCAUGCCCAGCGCCAGGAGCACGCCCAUUCCAAUGGCA---------ACCAGGAGG .((((..((((((.((((.(((.(....).))).))))).)))))..))))((((((((........))))..)))).---------......... ( -34.50) >DroSec_CAF1 21186 90 + 1 CAUUGAAUGUGCCGCUGGAGCGCCUGGAAUCCCGCCAGGCGCACGCCCAGCGCAACGAGCACGGCG---UGGAUGGCGG---AUCACGGCAGAUUG .....(((.(((((.(((.((((((((.......)))))))).((((..((((..((....)))))---)....)))).---.)))))))).))). ( -41.20) >DroEre_CAF1 26395 90 + 1 CCUUGAAUGUGCCGCUGGAGCGCCUGGAAUCCCGCCAGGCGCACGCCCAGCGCAACGAGCACGGCG---UGGAUGGGGG---AUUGCGGCAGAAUG .......(.((((((....((((((((.......)))))))).(.((((.(((..((....))..)---))..)))).)---...)))))).)... ( -41.60) >DroYak_CAF1 25105 90 + 1 CUUUGAAUGUGCCGCUGGAGCGCCUGGAAUCCCGCCAGGCGCACGCCCAGCGCACCGAGCACGGCG---UGGAUGGAGG---AUCACGGCAGAGUG .......(.(((((.(((.((((((((.......))))))))....(((.(((.(((....))).)---))..)))...---.)))))))).)... ( -38.20) >DroAna_CAF1 21902 93 + 1 CCCUAAAUGUGCCGCUGGAGCGCCUGGAGUCCCGCCAGGCGCACAACCAGCGCAACGAGCACGGCG---UGGAGGGCUCCUCCUCCCGCCAGAACG ........((((((((((.((((((((.......))))))))....))))))......))))((((---.((((((....))))))))))...... ( -48.20) >consensus CAUUGAAUGUGCCGCUGGAGCGCCUGGAAUCCCGCCAGGCGCACGCCCAGCGCAACGAGCACGGCG___UGGAUGGCGG___AUCACGGCAGAAUG ((((.(...(((((((((.((((((((.......))))))))....)))))((.....))..))))...).))))..................... (-30.85 = -31.52 + 0.67)
Location | 10,805,871 – 10,805,961 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.25 |
Mean single sequence MFE | -40.65 |
Consensus MFE | -29.97 |
Energy contribution | -30.30 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.34 |
Structure conservation index | 0.74 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533464 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10805871 90 - 22224390 CAUUCUGUCGUGAU---CCGCCAUCCA---CGCCGUGCUCGUUGCGCUGGGCGUGCGCCUGGCGGGAUUCCAGGCGCUCCAGCGGCACAUUCAAUG .........(((..---((((.....(---((((((((.....))))..)))))((((((((.......))))))))....)))))))........ ( -37.50) >DroVir_CAF1 19734 87 - 1 CCUCCUGGU---------UGCCAUUGGAAUGGGCGUGCUCCUGGCGCUGGGCAUGCGCCUGGCGCGACUCCAGACGCUCCAGCGGCACGUUCAGCG ..((((((.---------..)))..))).((((((((((.((((.((..(((....)))..))(((........))).)))).))))))))))... ( -39.20) >DroSec_CAF1 21186 90 - 1 CAAUCUGCCGUGAU---CCGCCAUCCA---CGCCGUGCUCGUUGCGCUGGGCGUGCGCCUGGCGGGAUUCCAGGCGCUCCAGCGGCACAUUCAAUG .(((.((((((...---.((((((((.---((((((((.....)))).((((....))))))))))))....)))).....)))))).)))..... ( -39.70) >DroEre_CAF1 26395 90 - 1 CAUUCUGCCGCAAU---CCCCCAUCCA---CGCCGUGCUCGUUGCGCUGGGCGUGCGCCUGGCGGGAUUCCAGGCGCUCCAGCGGCACAUUCAAGG .....((((((...---.........(---((((((((.....))))..)))))((((((((.......))))))))....))))))......... ( -40.50) >DroYak_CAF1 25105 90 - 1 CACUCUGCCGUGAU---CCUCCAUCCA---CGCCGUGCUCGGUGCGCUGGGCGUGCGCCUGGCGGGAUUCCAGGCGCUCCAGCGGCACAUUCAAAG .....((((((...---.........(---((((((((.....))))..)))))((((((((.......))))))))....))))))......... ( -38.20) >DroAna_CAF1 21902 93 - 1 CGUUCUGGCGGGAGGAGGAGCCCUCCA---CGCCGUGCUCGUUGCGCUGGUUGUGCGCCUGGCGGGACUCCAGGCGCUCCAGCGGCACAUUUAGGG ......(((((((((......))))).---))))((((......((((((....((((((((.......)))))))).))))))))))........ ( -48.80) >consensus CAUUCUGCCGUGAU___CCGCCAUCCA___CGCCGUGCUCGUUGCGCUGGGCGUGCGCCUGGCGGGAUUCCAGGCGCUCCAGCGGCACAUUCAAGG ...............................(((..((.....))(((((....((((((((.......)))))))).)))))))).......... (-29.97 = -30.30 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:15 2006