Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,794,177 – 10,794,271 |
Length | 94 |
Max. P | 0.898262 |
Location | 10,794,177 – 10,794,271 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 86.36 |
Mean single sequence MFE | -24.18 |
Consensus MFE | -15.73 |
Energy contribution | -16.04 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -2.86 |
Structure conservation index | 0.65 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10794177 94 + 22224390 UCUUGCGCCAAUUGCAAUUUUUGGCAUAGCAAUUAUUUUGUAU----------------GCGACUUUACUUCGCGUAAAUAGAAAAAUAAUUGCAUUAAUUGCGUGAAUA ((.((((((((.........)))))...(((((((((((.(((----------------((((.......)))))))......))))))))))).......))).))... ( -28.00) >DroSec_CAF1 10640 110 + 1 UCUUGCACCAAUUGCAAUUUUUGGCAUAGCAAUUAUUUUGUAUACCAAGCGUUUUGCUUGCCACUUUACUUCACGUAAAUACAAAAAUAAUUGCAUUAAUUGCGUGAAUA .....((((((((((........))...(((((((((((((((..(((((.....))))).....((((.....)))))))).)))))))))))...))))).))).... ( -26.40) >DroEre_CAF1 16901 110 + 1 UCUUGCACCAAUUGCAAAUUUUGGCAUAGCAAUUAUUUUGUACACCACUUAUUUUGUAUGCCACUUUACUUCACGUAAAUAGAAAAAUAAUUGCAUUAAUUGCGUGAAUA .....((((((((((........))...((((((((((((((((..........))))).....(((((.....)))))....)))))))))))...))))).))).... ( -20.50) >DroYak_CAF1 17073 110 + 1 UCUUGCACCAAUUGCAAAUUUUGGCAUAGCAAUUAUUUUGUAUAGCAAUUAUUUUGUAUGCCACUUUAGCACACGUAAAUAGAAAAAUAAUUGCAUUAAUUGCGUGAAUA .....((((((((((........))...((((((((((((.....)..(((((((((.(((.......))).))).)))))).)))))))))))...))))).))).... ( -21.80) >consensus UCUUGCACCAAUUGCAAAUUUUGGCAUAGCAAUUAUUUUGUAUACCAAUUAUUUUGUAUGCCACUUUACUUCACGUAAAUAGAAAAAUAAUUGCAUUAAUUGCGUGAAUA .....((((((((((........))...((((((((((((((................)))...(((((.....)))))....)))))))))))...))))).))).... (-15.73 = -16.04 + 0.31)
Location | 10,794,177 – 10,794,271 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 86.36 |
Mean single sequence MFE | -24.00 |
Consensus MFE | -15.50 |
Energy contribution | -15.81 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -2.57 |
Structure conservation index | 0.65 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10794177 94 - 22224390 UAUUCACGCAAUUAAUGCAAUUAUUUUUCUAUUUACGCGAAGUAAAGUCGC----------------AUACAAAAUAAUUGCUAUGCCAAAAAUUGCAAUUGGCGCAAGA .......((.......(((((((((((..(((....((((.......))))----------------))).)))))))))))...(((((.........))))))).... ( -20.30) >DroSec_CAF1 10640 110 - 1 UAUUCACGCAAUUAAUGCAAUUAUUUUUGUAUUUACGUGAAGUAAAGUGGCAAGCAAAACGCUUGGUAUACAAAAUAAUUGCUAUGCCAAAAAUUGCAAUUGGUGCAAGA ..((((((.....(((((((......)))))))..))))))......((((((((((.....(((.....))).....))))).)))))....(((((.....))))).. ( -27.80) >DroEre_CAF1 16901 110 - 1 UAUUCACGCAAUUAAUGCAAUUAUUUUUCUAUUUACGUGAAGUAAAGUGGCAUACAAAAUAAGUGGUGUACAAAAUAAUUGCUAUGCCAAAAUUUGCAAUUGGUGCAAGA .......(((.(((((((((...........(((((.....))))).((((((((((......((.....))......))).)))))))....)))).)))))))).... ( -22.60) >DroYak_CAF1 17073 110 - 1 UAUUCACGCAAUUAAUGCAAUUAUUUUUCUAUUUACGUGUGCUAAAGUGGCAUACAAAAUAAUUGCUAUACAAAAUAAUUGCUAUGCCAAAAUUUGCAAUUGGUGCAAGA .......(((((((..(((((((((((.........(((((((.....)))))))))))))))))).........)))))))..........((((((.....)))))). ( -25.30) >consensus UAUUCACGCAAUUAAUGCAAUUAUUUUUCUAUUUACGUGAAGUAAAGUGGCAUACAAAAUAAUUGGUAUACAAAAUAAUUGCUAUGCCAAAAAUUGCAAUUGGUGCAAGA .......((.......(((((((((((....(((((.....)))))(((...................))))))))))))))...(((((.........))))))).... (-15.50 = -15.81 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:11 2006