Locus 4091

Sequence ID X_DroMel_CAF1
Location 10,792,243 – 10,792,348
Length 105
Max. P 0.542819
window6725

overview

Window 5

Location 10,792,243 – 10,792,348
Length 105
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 78.37
Mean single sequence MFE -44.65
Consensus MFE -22.92
Energy contribution -24.70
Covariance contribution 1.78
Combinations/Pair 1.26
Mean z-score -1.86
Structure conservation index 0.51
SVM decision value 0.02
SVM RNA-class probability 0.542819
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10792243 105 + 22224390
CAAGUCGGAGCAAAGAGCUCCGGCCAAACUGGAGGACACACGGAAGCUUAUGUUGCAGCAGCAGCUGGGUGGACUCUUUGCCAGCGUGUCUGGUGGAAAUUCCGG
...((((((((.....))))))))....((((((..(((.((((.(((...(((((....)))))..((..((...))..)))))...)))))))....)))))) ( -42.30)
>DroVir_CAF1 8082 98 + 1
UAAGUCAGAGCAGCGUGCGCCCGCCAAGCUGGAGGACACGCGCAAGCUGAUGCUUCAGCAGCAGCUGGGCGGGCUCUUUGCCAGCGCCAAUGC-------GCCGG
.....((((((.....))(((((((.(((((.....((.((....)))).(((....))).))))).)))))))..))))((.((((....))-------)).)) ( -42.60)
>DroPse_CAF1 11782 105 + 1
CAAGUCGGAGCAACGGGCUCCGUCCAAGCUGGAGGACACCCGCAAGCUGAUGCUCCAGCAGCAGCUUGGAGGACUCUUUGCUAGCGUCAGCGGUAGCGGGGCAGG
..(((((((((.....))))).(((((((((..((....))....((((......))))..))))))))).))))((((((((.((....)).)))))))).... ( -47.00)
>DroWil_CAF1 7825 105 + 1
UAAGUCGGAGCAACGAGCUCCAGCCAAAUUGGAGGACACUCGUAAGUUGAUGCUGCAACAACAGCUUGGCGGCCUCUUUGCAAGCGUGAGCUCUGGUGGAGCAGG
...((((((((.....))))).(((((.((((((....)))....((((......))))..))).))))))))(((((..(.(((....)))...)..))).)). ( -39.70)
>DroMoj_CAF1 9212 102 + 1
CAAGUCGGACCAGCGGGCCCCGGCCAAGCUGGAGGACACGCGCAAGCUGAUGCUGCAGCAGCAGCUGGGCGGACUCUUCGCUGGCGCCAAUGC---CAGCUCCAG
......(((.((((.(((....)))..))))(((((..(((.((.((((.(((....))).)))))).)))...)))))(((((((....)))---))))))).. ( -49.30)
>DroPer_CAF1 12052 105 + 1
CAAGUCGGAGCAACGGGCUCCGUCCAAGCUGGAGGACACCCGCAAGCUGAUGCUCCAGCAGCAGCUUGGAGGACUCUUUGCUAGCGUCAGCGGUAGCGGGGCAGG
..(((((((((.....))))).(((((((((..((....))....((((......))))..))))))))).))))((((((((.((....)).)))))))).... ( -47.00)
>consensus
CAAGUCGGAGCAACGGGCUCCGGCCAAGCUGGAGGACACCCGCAAGCUGAUGCUGCAGCAGCAGCUGGGCGGACUCUUUGCUAGCGUCAGCGCU_GCGGGGCAGG
...((((((((.....))))))))...(((((.(((..(.(((..((((.(((....))).))))...))))..)))...))))).................... (-22.92 = -24.70 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:08 2006