Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,792,086 – 10,792,203 |
Length | 117 |
Max. P | 0.513911 |
Location | 10,792,086 – 10,792,203 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.80 |
Mean single sequence MFE | -45.55 |
Consensus MFE | -31.47 |
Energy contribution | -30.58 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.47 |
Mean z-score | -1.22 |
Structure conservation index | 0.69 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10792086 117 + 22224390 AGAGUGUGGUCA---CCACAAAGCUGGCCAAGAAGAGUUUCGAGAUCGGUGCGGAUCGUCCGCCGCCGGGCAGUGUGGGUAAACUUAAGCUCAGUUCCGAGAUGCGACAGCGGUUGGAGC .((((..(((..---((((...((((.((..(((....)))......(((((((.....))).)))))).))))))))....)))...)))).(((((((..(((....))).))))))) ( -43.30) >DroVir_CAF1 7923 119 + 1 -GACCACAAUAACGGCCACAAAGCUGGCCAAGAAGAGCUUCGAGAUUGGCGCCGAUCGACCGCCGCCGGGCAGCGUCGGCAAGCUGAAGCUCAGCUCGGAGAUGCGCCAACGUCUCGAGC -............(((((......))))).......(((.((((((((((((..(((..((((((.((.....)).)))).(((((.....))))).)).)))))))))..))))))))) ( -49.40) >DroGri_CAF1 8259 119 + 1 -AACGACAAUCACAGCCACAAAGCUGGCGAAGAAGAGCUUCGAGAUUGGCGCUGAUCGUCCGCCGCCAGGCAGUGUCGGCAAACUGAAGCUCAGCUCGGAGAUGCGUCAGCGUUUGGAAC -..((((((((.((((......)))).(((((.....))))).)))))((((((((((((.((((.((.....)).))))...((((.((...)))))).)))).))))))))))).... ( -42.00) >DroWil_CAF1 7665 120 + 1 AAUCCAUGGUUACCACCACAAAGUUGGCCAAGAAAAGCUUUGAAAUCGGUGCUGAUCGCCCGCCACCGGGUAGUGUGGGCAAGCUUAAACUGAGCUCCGAGAUGCGCCAACGCCUGGAAC ..((((.(((........(((((((..........))))))).....(((((...((((((((.((......)))))))).(((((.....)))))..))...)))))...))))))).. ( -40.60) >DroMoj_CAF1 9053 119 + 1 -AACCACAAUUACAGCCACGAAGCUGGCGAAGAAGAGCUUUGAGAUUGGGGCCGACCGGCCGCCGCCGGGCAGCGUGGGCAAGCUGAAGCUCAGCUCGGAGAUGCGCCAGCGCCUGGAGC -.....(((((.((((......)))).(((((.....))))).))))).((((....))))((..((((((.((.(((((((((((.....)))))......))).))))))))))).)) ( -46.00) >DroAna_CAF1 9007 120 + 1 AGAGUGUCGUCACGACCACCAAGCUGGCCAAGAAGAGCUUCGAGAUCGGAGCCGAUCGCCCGCCUCCGGGCAGCGUGGGCAAGCUGAAGCUCAGCUCCGAGAUGCGCCAGCGCCUGGAGC ...(.((((...))))).(((.((((((......((((((((.(((((....)))))((((((((......)).))))))....)))))))).((........))))))))...)))... ( -52.00) >consensus _AACCACAAUCACAGCCACAAAGCUGGCCAAGAAGAGCUUCGAGAUCGGCGCCGAUCGCCCGCCGCCGGGCAGCGUGGGCAAGCUGAAGCUCAGCUCCGAGAUGCGCCAGCGCCUGGAGC ...............(((....((((((......(((((((..(.((((((.((......)).)))))).)(((........)))))))))).((........))))))))...)))... (-31.47 = -30.58 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:07 2006