Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,786,505 – 10,786,606 |
Length | 101 |
Max. P | 0.516213 |
Location | 10,786,505 – 10,786,606 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 75.99 |
Mean single sequence MFE | -37.82 |
Consensus MFE | -19.69 |
Energy contribution | -20.38 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.17 |
Mean z-score | -1.65 |
Structure conservation index | 0.52 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516213 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10786505 101 + 22224390 UUGUCGCUUUGGGAUUAGUGGGAGUUG--AGACUUAA--AGAGGUGUUCGUCAAUAGAUGCGCAUCGUACGGUUUCAUUUGGAGCCGUGGCAACGCGGCGG---CGGA ...(((((.................((--(((((...--...(((((.((((....)))).)))))....)))))))......((((((....))))))))---))). ( -34.80) >DroSec_CAF1 2783 101 + 1 UUGUCGCUUUGUGAUUAGUGGGAGUUG--AGACCUAU--AGCGGGGUUCGUCAAUAGAUGCGCAUCGUACGGUUCCAUUUGGAGCCGUGGCAACGCGGCGG---CGGA ((((((((.(((.....(((((.....--...)))))--.(((..((.((((....)))).))..).(((((((((....))))))))))).))).)))))---))). ( -37.60) >DroSim_CAF1 2828 101 + 1 UUGUCGCUUUGGGAUUAGUGGGAGUUG--AGACCAAU--AGCGGGGUUCGUCAAUAGAUGCGCAUCGUACGGUUCCAUUUGGAGCCGUGGCAACGCGGCGG---CGGA ((((((((((((..((((......)))--)..)))).--.(((..((.((((....)))).))...((((((((((....)))))))).))..))))))))---))). ( -38.70) >DroEre_CAF1 9196 103 + 1 AGUUCGUUGGGGGAACCGUGGGAGUUG--AGACCCAUAGAGCGGGGUUCGUCCAUAGAUGCGCAUCGUACGUUUCCAUUUGGAGCCGUGGCAACGCGGCGG---CGGA ..((((((..((((((.(((((.....--...))))).(.(((..((.((((....)))).))..))).))))))).......((((((....))))))))---)))) ( -39.80) >DroYak_CAF1 9319 103 + 1 AGUUCGCUGGGGCAUCUGUGGGAGUUG--AGACUUGUGGAGUGGGGCUCUUUGAUAGAUGCGCAUCGUACGGUUCCAUUUGGAGCCGUGGCAACGCGGCGG---CGGA ..((((((((.(((((((((((((((.--..((((...))))..)))))))..)))))))).).((((((((((((....))))))))(....))))))))---)))) ( -44.50) >DroMoj_CAF1 2809 87 + 1 ---------UU-------CGAUAGUCGAUAGUCCAUU----AUCGGCAG-UCGAUAGAUGCGCAUCGUACGCUUCCACCUGGAGCCAUGGCAGCGCGGCAGCGGCUGC ---------..-------(((((((.(.....).)))----))))((((-(((.....(((((..........(((....)))((....)).)))))....))))))) ( -31.50) >consensus UUGUCGCUUUGGGAUUAGUGGGAGUUG__AGACCUAU__AGCGGGGUUCGUCAAUAGAUGCGCAUCGUACGGUUCCAUUUGGAGCCGUGGCAACGCGGCGG___CGGA .................(((.(((((....)))............((.((((....)))).)).)).)))...(((....)))((((((....))))))......... (-19.69 = -20.38 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:06 2006