Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,781,838 – 10,781,933 |
Length | 95 |
Max. P | 0.981134 |
Location | 10,781,838 – 10,781,933 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -32.20 |
Energy contribution | -32.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.40 |
Structure conservation index | 1.00 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.963815 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10781838 95 + 22224390 GACUGCAGGCAGCGACGUCUUAGCAUUGGAAUGCGGUCGAACCCGUAGCUAGCCAAGAUUUUUGCUGGCUGCCUUAGUCAUUGUUUUUGUUAUUA ((((((((.((((((.(((((.((..(((..(((((......))))).))))).)))))..)))))).))))...))))................ ( -32.20) >DroSec_CAF1 31300 95 + 1 GACUGCAGGCAGCGACGUCUUAGCAUUGGAAUGCGGUCGAACCCGUAGCUAGCCAAGAUUUUUGCUGGCUGCCUUAGUCAUUGUUUUUGUUAUUA ((((((((.((((((.(((((.((..(((..(((((......))))).))))).)))))..)))))).))))...))))................ ( -32.20) >DroSim_CAF1 30040 95 + 1 GACUGCAGGCAGCGACGUCUUAGCAUUGGAAUGCGGUCGAACCCGUAGCUAGCCAAGAUUUUUGCUGGCUGCCUUAGUCAUUGUUUUUGUUAUUA ((((((((.((((((.(((((.((..(((..(((((......))))).))))).)))))..)))))).))))...))))................ ( -32.20) >consensus GACUGCAGGCAGCGACGUCUUAGCAUUGGAAUGCGGUCGAACCCGUAGCUAGCCAAGAUUUUUGCUGGCUGCCUUAGUCAUUGUUUUUGUUAUUA ((((((((.((((((.(((((.((..(((..(((((......))))).))))).)))))..)))))).))))...))))................ (-32.20 = -32.20 + -0.00)
Location | 10,781,838 – 10,781,933 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -27.80 |
Energy contribution | -27.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.72 |
Structure conservation index | 1.00 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10781838 95 - 22224390 UAAUAACAAAAACAAUGACUAAGGCAGCCAGCAAAAAUCUUGGCUAGCUACGGGUUCGACCGCAUUCCAAUGCUAAGACGUCGCUGCCUGCAGUC ................((((.((((((((((........))))))(((.(((((.....))((((....)))).....))).)))))))..)))) ( -27.80) >DroSec_CAF1 31300 95 - 1 UAAUAACAAAAACAAUGACUAAGGCAGCCAGCAAAAAUCUUGGCUAGCUACGGGUUCGACCGCAUUCCAAUGCUAAGACGUCGCUGCCUGCAGUC ................((((.((((((((((........))))))(((.(((((.....))((((....)))).....))).)))))))..)))) ( -27.80) >DroSim_CAF1 30040 95 - 1 UAAUAACAAAAACAAUGACUAAGGCAGCCAGCAAAAAUCUUGGCUAGCUACGGGUUCGACCGCAUUCCAAUGCUAAGACGUCGCUGCCUGCAGUC ................((((.((((((((((........))))))(((.(((((.....))((((....)))).....))).)))))))..)))) ( -27.80) >consensus UAAUAACAAAAACAAUGACUAAGGCAGCCAGCAAAAAUCUUGGCUAGCUACGGGUUCGACCGCAUUCCAAUGCUAAGACGUCGCUGCCUGCAGUC ................((((.((((((((((........))))))(((.(((((.....))((((....)))).....))).)))))))..)))) (-27.80 = -27.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:01 2006