Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,781,537 – 10,781,649 |
Length | 112 |
Max. P | 0.810470 |
Location | 10,781,537 – 10,781,649 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 95.77 |
Mean single sequence MFE | -34.20 |
Consensus MFE | -32.39 |
Energy contribution | -32.17 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.92 |
Structure conservation index | 0.95 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10781537 112 - 22224390 ACUAAGUGUUGGAUAAGUGAAGCCAGGUUUUUUUGCGGCAUGGGUUGGGCACUUCAGGUUGGUAACGGAAGUUGCGCAAUUGAAGGCACUUGAAUUGAGAUUCAUCUCUCAA ..(((((((.......((..((((..(((.......)))...))))..)).((((((.((((((((....))))).))))))))))))))))..((((((......)))))) ( -34.20) >DroSec_CAF1 31010 107 - 1 ACUAAGUGUUGGAUAAGUGAAGCCAGGUUU--UUGCGGCAUGGGUUGGGCACUUCAGGUUGGCAACGGAAGUUGCGCAAUGGAAGGCACUUGAAUUGAGAUUCAUCUCU--- ..(((((((.......((..((((..(((.--....)))...))))..)).((((..(((((((((....))))).)))).)))))))))))....((((....)))).--- ( -34.20) >DroSim_CAF1 29756 107 - 1 ACUAAGUGUUGGAUAAGUGAAGCCAGGUUU--UUGCGGCAUGGGUUGGGCACUUCAGGUUGGCAACGGAAGUUGCGCAAUGGAAGGCACUUGAAUUGAGAUUCAUCUCU--- ..(((((((.......((..((((..(((.--....)))...))))..)).((((..(((((((((....))))).)))).)))))))))))....((((....)))).--- ( -34.20) >consensus ACUAAGUGUUGGAUAAGUGAAGCCAGGUUU__UUGCGGCAUGGGUUGGGCACUUCAGGUUGGCAACGGAAGUUGCGCAAUGGAAGGCACUUGAAUUGAGAUUCAUCUCU___ ..(((((((.......((..((((..(((.......)))...))))..)).((((..(((((((((....))))).)))).)))))))))))....((((....)))).... (-32.39 = -32.17 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:59 2006