Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,780,254 – 10,780,374 |
Length | 120 |
Max. P | 0.963018 |
Location | 10,780,254 – 10,780,374 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -36.93 |
Consensus MFE | -33.87 |
Energy contribution | -33.77 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.96 |
Structure conservation index | 0.92 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10780254 120 - 22224390 AAUUUGUACCUACAAACUGGAGCUGAUGAACGAUAUGGUCUUAAAAGGCCAUAUCCAAUUUAAUGGCCGGCAAGCUUUCGGUUUCUGGUAUCACACAGUUUCCCAAAGUGGAUCUGGCAU .(((.((.((........)).)).)))....((((((((((....))))))))))..........(((((...(((((.((...(((........)))...)).)))))....))))).. ( -34.70) >DroSec_CAF1 29790 120 - 1 AAUUUAUACCUACAAGCUGGAGCUGAUGAACGAUAUGGUCUCAAAAGGCCAUAUCCAAUUUAAUGGACGGCAAGCUUUCGGUUUCUGGUAUCACACAGAUUCCCAAAGUGGAUCUGGCAU ...............((..((((((........((((((((....))))))))((((......))))))))..(((((.((..((((........))))..)).)))))...))..)).. ( -38.10) >DroSim_CAF1 28462 120 - 1 AAUUUAUACCUACAAGCUGGAGCUAAUGAACGAUAUGGUCUCAAAAGGCCAUAUCCAAUUUAAUGGCCGGCAAGCUUUCGGUUUCUGGUAUCACACAGAUUCCCAAAGUGGAUCUGGCAU ...............((..((((((.((((.((((((((((....))))))))))...)))).))))......(((((.((..((((........))))..)).)))))...))..)).. ( -38.00) >consensus AAUUUAUACCUACAAGCUGGAGCUGAUGAACGAUAUGGUCUCAAAAGGCCAUAUCCAAUUUAAUGGCCGGCAAGCUUUCGGUUUCUGGUAUCACACAGAUUCCCAAAGUGGAUCUGGCAU .....(((((...(((((((((((..((...((((((((((....))))))))))((......))..))...))).))))))))..)))))....(((((((.......))))))).... (-33.87 = -33.77 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:56 2006