Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,780,083 – 10,780,174 |
Length | 91 |
Max. P | 0.653444 |
Location | 10,780,083 – 10,780,174 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 83.49 |
Mean single sequence MFE | -26.97 |
Consensus MFE | -19.14 |
Energy contribution | -19.37 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.11 |
Mean z-score | -1.90 |
Structure conservation index | 0.71 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653444 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10780083 91 - 22224390 CGCUGGCCUGUGGCUUCGCUAAAAAUACCUGGCUAAUUCAAUUUGGACUGCAGUC----------------CUCCCGUUCUCCCCCCUUCCCCUCGAGCCCAGCCAU ...((((.((.(((((.((((........))))...........((((....)))----------------).......................))))))))))). ( -22.40) >DroSec_CAF1 29609 101 - 1 CGCUGUCCUGUGGCUUCGCCAAAAAUACCUGGCUAAUUCAAUUUGGACUGCAGUCCGGGGAUCGAAAAAAUCUCCCAUUCUCCCC------CCUCGAGCCCAGCCAU .......(((.(((((.((((........))))...........((((....))))(((((..(((...........))))))))------....)))))))).... ( -27.40) >DroSim_CAF1 28281 101 - 1 CGCUGGCCUGUGGCUUCGCUAAAAAUACCUGGCUAAUUCAAUUUGGACUGCAGUCCGGGGAUCGAAAAAAUCUCCCAUUCUCCCC------CCUCGAGCCCGGCCAU ...(((((.(.(((((.((((........))))...........((((....))))(((((..(((...........))))))))------....))))))))))). ( -31.10) >consensus CGCUGGCCUGUGGCUUCGCUAAAAAUACCUGGCUAAUUCAAUUUGGACUGCAGUCCGGGGAUCGAAAAAAUCUCCCAUUCUCCCC______CCUCGAGCCCAGCCAU ...((((.((.(((((.((((........))))...........((((....)))).......................................))))))))))). (-19.14 = -19.37 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:55 2006