Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,779,968 – 10,780,059 |
Length | 91 |
Max. P | 0.751828 |
Location | 10,779,968 – 10,780,059 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 82.00 |
Mean single sequence MFE | -26.70 |
Consensus MFE | -19.12 |
Energy contribution | -20.00 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -1.78 |
Structure conservation index | 0.72 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10779968 91 - 22224390 CAACAACGU-CUGGCUGCGACUGGCUGACUGACAGUUUGACUUAUUGGCUAAAAGCUUUGGCCAAAAACAGUCAACAA-CAGCACGCACUCAC---------------- .........-.((..((((.(((((((.....))))((((((..((((((((.....))))))))....))))))...-)))..))))..)).---------------- ( -25.40) >DroSec_CAF1 29494 91 - 1 CAACAACGU-CUGGCUGCGACUGGCUGACUGACAGUUUGACUUAUUGGCUAAAAGCUUUGGCCAAAAACAGUCAACAA-CAGCACGCACUCAC---------------- .........-.((..((((.(((((((.....))))((((((..((((((((.....))))))))....))))))...-)))..))))..)).---------------- ( -25.40) >DroSim_CAF1 28166 91 - 1 CAACAACGU-CUGGCUGCGACUGGCUGACUGACAGUUUGACUUAUUGGCUAAAAGCUUUGGCCAAAAACAGUCAACAA-CAGCACGCACUCAC---------------- .........-.((..((((.(((((((.....))))((((((..((((((((.....))))))))....))))))...-)))..))))..)).---------------- ( -25.40) >DroPer_CAF1 41007 107 - 1 CCACAAUUUACUG--UGUGCCUGUCUGACGGACAGUUUGACUCAUUGGCUAAAAGCUUUGGCCAAAAGCAGACAACAGUCAACUGGCAAUCGCUUGGCCCGGUGUGCCC .((((......))--))((((.((.((((.....(((((.((..((((((((.....)))))))).)))))))....)))))).)))).......(((.......))). ( -30.60) >consensus CAACAACGU_CUGGCUGCGACUGGCUGACUGACAGUUUGACUUAUUGGCUAAAAGCUUUGGCCAAAAACAGUCAACAA_CAGCACGCACUCAC________________ ...........(((.((((.(((((((.....))))((((((..((((((((.....))))))))....))))))....)))..)))).)))................. (-19.12 = -20.00 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:54 2006