Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,779,593 – 10,779,702 |
Length | 109 |
Max. P | 0.854674 |
Location | 10,779,593 – 10,779,702 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 85.66 |
Mean single sequence MFE | -25.86 |
Consensus MFE | -20.14 |
Energy contribution | -20.30 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.95 |
Structure conservation index | 0.78 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10779593 109 + 22224390 CAACAUGGCGCGCAUAUUUUUUUCUUCUUUUUUUUUUUACCAAAGGUUUAUUGGCCUUUUGGCUUACUCUCUGCAC----GCGCCUGUGUGUGUGUCGCCAUUUUAGCUCGAA ....(((((((((..........................(((((((((....)))).)))))..........((((----((....))))))))).))))))........... ( -27.30) >DroPse_CAF1 46538 105 + 1 CAACAUGGCGCGCU-----UUUUU---CUAUAUUUUUCUCCAAAGGUUUAUUGGCCUUUUGGCUUACUCUUGCCAGUUCUCUGCGUGUGUGUGUGUCGCCAUUUUAGCUCGAA ....(((((((((.-----.....---............(((((((((....)))).)))))..(((.(.(((.((....))))).).))).))).))))))........... ( -23.60) >DroSec_CAF1 29126 106 + 1 CAACAUGGCGCGCAUAUUUUUUUU---UUUCAUUUUUUACCAAAGGUUUAUUGGCCUUUUGGCUUACUCUCUGCAC----GCGCCUGUGUGUGUGUCGCCAUUUUAGCUCGAA ....(((((((((...........---............(((((((((....)))).)))))..........((((----((....))))))))).))))))........... ( -27.30) >DroSim_CAF1 27794 106 + 1 CAACAUGGCGCGCAUAUUUUUUUU---UUUCAUUUUUUACCAAAGGUUUAUUGGCCCUUUGGCUUACUCUCUGCAC----GCGCCUGUGUGUGUGUCGCCAUUUUAGCUCGAA ....(((((((((...........---............(((((((.........)))))))..........((((----((....))))))))).))))))........... ( -27.50) >DroPer_CAF1 40595 104 + 1 CAACAUGGCGCGCU-----UUUUU----UAUAUUUUUCUCCAAAGGUUUAUUGGCCUUUUGGCUUACUCUUGCCAGUUCUCUGCGUGUGUGUGUGUCGCCAUUUUAGCUCGAA ....(((((((((.-----.....----(((((........(((((((....)))))))((((........)))).........)))))...))).))))))........... ( -23.60) >consensus CAACAUGGCGCGCAUAUUUUUUUU___UUUUAUUUUUUACCAAAGGUUUAUUGGCCUUUUGGCUUACUCUCUGCAC____GCGCCUGUGUGUGUGUCGCCAUUUUAGCUCGAA ....(((((((((..........................(((((((((....)))).)))))..................((((....))))))).))))))........... (-20.14 = -20.30 + 0.16)
Location | 10,779,593 – 10,779,702 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 85.66 |
Mean single sequence MFE | -23.00 |
Consensus MFE | -17.62 |
Energy contribution | -17.54 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.15 |
Mean z-score | -1.71 |
Structure conservation index | 0.77 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10779593 109 - 22224390 UUCGAGCUAAAAUGGCGACACACACACAGGCGC----GUGCAGAGAGUAAGCCAAAAGGCCAAUAAACCUUUGGUAAAAAAAAAAAGAAGAAAAAAAUAUGCGCGCCAUGUUG .....(((.....))).........((((((((----((((.....))..((((((.((........)))))))).........................))))))).))).. ( -24.10) >DroPse_CAF1 46538 105 - 1 UUCGAGCUAAAAUGGCGACACACACACACGCAGAGAACUGGCAAGAGUAAGCCAAAAGGCCAAUAAACCUUUGGAGAAAAAUAUAG---AAAAA-----AGCGCGCCAUGUUG ...........((((((...........(((.......((((........))))(((((........)))))..............---.....-----.))))))))).... ( -19.20) >DroSec_CAF1 29126 106 - 1 UUCGAGCUAAAAUGGCGACACACACACAGGCGC----GUGCAGAGAGUAAGCCAAAAGGCCAAUAAACCUUUGGUAAAAAAUGAAA---AAAAAAAAUAUGCGCGCCAUGUUG .....(((.....))).........((((((((----((((.....))..((((((.((........))))))))...........---...........))))))).))).. ( -24.10) >DroSim_CAF1 27794 106 - 1 UUCGAGCUAAAAUGGCGACACACACACAGGCGC----GUGCAGAGAGUAAGCCAAAGGGCCAAUAAACCUUUGGUAAAAAAUGAAA---AAAAAAAAUAUGCGCGCCAUGUUG .....(((.....))).........((((((((----((((.....))..((((((((.........))))))))...........---...........))))))).))).. ( -28.40) >DroPer_CAF1 40595 104 - 1 UUCGAGCUAAAAUGGCGACACACACACACGCAGAGAACUGGCAAGAGUAAGCCAAAAGGCCAAUAAACCUUUGGAGAAAAAUAUA----AAAAA-----AGCGCGCCAUGUUG ...........((((((...........(((.......((((........))))(((((........))))).............----.....-----.))))))))).... ( -19.20) >consensus UUCGAGCUAAAAUGGCGACACACACACAGGCGC____GUGCAGAGAGUAAGCCAAAAGGCCAAUAAACCUUUGGUAAAAAAUAAAA___AAAAAAAAUAUGCGCGCCAUGUUG ...........((((((.(.(........((((....)))).........(((((.(((........)))))))).........................).))))))).... (-17.62 = -17.54 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:53 2006