Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,779,139 – 10,779,347 |
Length | 208 |
Max. P | 0.739792 |
Location | 10,779,139 – 10,779,238 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 79.37 |
Mean single sequence MFE | -11.31 |
Consensus MFE | -9.89 |
Energy contribution | -10.57 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.24 |
Mean z-score | -0.79 |
Structure conservation index | 0.87 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602768 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10779139 99 - 22224390 ------AACCAACUACUGGCAUCCUUAAACUGCAAUGCCUACUUUCAAUUGAAAAUUAUACUUAAGCUUCAAAACUAAUGUAUCUGUAGUUUGAUUUUGGGCUUC ------..((((.....((...))((((((((((((((..........(((((..(((....)))..))))).......)))).))))))))))..))))..... ( -15.73) >DroSec_CAF1 28665 104 - 1 AACCAUAACGAAAUACUAACAUCCUCAAACUACAAUGCCUGUUAUCA-ACGAUAAUUCUACUUAAACUUCAAAACUACUGUUUCUGUAGUUUAAUAAUGAAUUUU ...................(((..(.((((((((......((((((.-..))))))...............((((....)))).)))))))).)..)))...... ( -10.10) >DroSim_CAF1 27332 105 - 1 AACCAUAACGAAAUACUGACAUCCUUAAACUACAAUGCCUGUUCUCAAACGAUAACUCUACUUAAACUUCAAAACUACUGUAUCUGUUGUUUAAUAAUGAAUUUU ...................(((..((((((.(((((((..(((....)))((....)).....................)))).))).))))))..)))...... ( -8.10) >consensus AACCAUAACGAAAUACUGACAUCCUUAAACUACAAUGCCUGUUAUCAAACGAUAAUUCUACUUAAACUUCAAAACUACUGUAUCUGUAGUUUAAUAAUGAAUUUU ...................(((..((((((((((......((((((....)))))).................((....))...))))))))))..)))...... ( -9.89 = -10.57 + 0.67)
Location | 10,779,238 – 10,779,347 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 93.39 |
Mean single sequence MFE | -28.11 |
Consensus MFE | -27.86 |
Energy contribution | -27.75 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.49 |
Structure conservation index | 0.99 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739792 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10779238 109 - 22224390 UUUUGCGUCUAUGCGUUGCUGCCGCACCCGCAACAUUGAUUGCUGCAACAAGGGACGCCAGAUGCACUGAGGGAAAAUAUAAAUUAAUUCCAAAGAAUCUCAUUUCAUC-- ...(((((((..(((((.((...(((...((((......)))))))....)).))))).)))))))((...((((............))))..))..............-- ( -26.10) >DroSec_CAF1 28769 111 - 1 UUUUGCGUCUAUGCGUUGCUGCCGCACCCGCAACAUUGGUUGCUGCAACAAGGGACGCCAGAUGCACUGAGGAAAAAUAUUAAUUAAUUCCAAAGAAUCUCACAAAAUCAU ...(((((((..(((((.((...(((...(((((....))))))))....)).))))).)))))))((..((((.............))))..))................ ( -29.12) >DroSim_CAF1 27437 111 - 1 UUUUGCGUCUAUGCGUUGCUGCCGCACCCGCAACAUUGGUUGCUGCAACAAGGGACGCCAGAUGCACUGAGGAAAAAUAUAAAUUAAUUCCAAGGAAUCUCAUUUAACCAU ...(((((((..(((((.((...(((...(((((....))))))))....)).))))).)))))))((..((((.............))))..))................ ( -29.12) >consensus UUUUGCGUCUAUGCGUUGCUGCCGCACCCGCAACAUUGGUUGCUGCAACAAGGGACGCCAGAUGCACUGAGGAAAAAUAUAAAUUAAUUCCAAAGAAUCUCAUUUAAUCAU ...(((((((..(((((.((...(((...(((((....))))))))....)).))))).)))))))((..((((.............))))..))................ (-27.86 = -27.75 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:51 2006