Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,778,934 – 10,779,031 |
Length | 97 |
Max. P | 0.528690 |
Location | 10,778,934 – 10,779,031 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 95.88 |
Mean single sequence MFE | -23.63 |
Consensus MFE | -23.32 |
Energy contribution | -23.10 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.36 |
Structure conservation index | 0.99 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10778934 97 + 22224390 UUCUAACCUACAUACACAUAUGCCGCCCCUGGAGUCAAAGUACCAUCUUUGGCGGCGGCACCUCCGUCAGAUUUCCGUUUGAAGUAUUGCAAUACCU ...........((((.....(((((((......(((((((......))))))))))))))......((((((....)))))).)))).......... ( -24.50) >DroSec_CAF1 28443 97 + 1 UUCUAACCUACAUACACACAUGUCGCCCCUGGAGUCAAAGUCCCAUCUUUGGCGGCGGCACCUUCGUCAGAUUUCCGUUUGAAGUAUUGCAGUACCU .......((.(((((.....(((((((......(((((((......))))))))))))))......((((((....)))))).))).)).))..... ( -22.10) >DroSim_CAF1 27115 97 + 1 UUCUAACCUACAUACACACAUGCCGCCCCUGGAGUCAAAGUCCCAUCUUUGGUGGCGGCACCUCCGUCAGAUUUCCGUUUGAAGUAUUGCAGUACCU .......((.(((((.....(((((((.(..(((............)))..).)))))))......((((((....)))))).))).)).))..... ( -24.30) >consensus UUCUAACCUACAUACACACAUGCCGCCCCUGGAGUCAAAGUCCCAUCUUUGGCGGCGGCACCUCCGUCAGAUUUCCGUUUGAAGUAUUGCAGUACCU ...........((((.....(((((((.(..(((............)))..).)))))))......((((((....)))))).)))).......... (-23.32 = -23.10 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:50 2006